Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq250 156 3e-33 >seq250 Length=801907 Score = 156 bits (172), Expect = 3e-33 Identities = 223/310 (72%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 91798 TCATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACA 91857 ||||||||| || ||| ||| ||||||| || | |||||| ||||| | | | || Sbjct 162190 TCATTTCCCGACGTTCGCCTCCAAGGAGGACTGCACCGTCATCACTGACACAGCC-GCCA 162248 Query 91858 A-CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGC 91916 | || || | || |||||||||||||| || ||||| || |||||||| || || |||| Sbjct 162249 AGCTTGAGCGCAGCGGCTTCTACTGGGGCCCGTTGGGAGTGGAGGAGGCCCACCGCATGC 162308 Query 91917 TGCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGT 91976 | |||| | | | |||||||||| || || || || ||| |||| ||||||||||| | Sbjct 162309 TCCGCAGCGCCCCGCTGGGCAGCTACCTTATCCGCGACAGCCGGCAGAAGGACGTCTTCT 162368 Query 91977 TCACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGACA 92036 |||| ||||| |||||| || ||||| ||||||||| | || || |||||| | Sbjct 162369 TCACCCTGTCCTATCACGACAGGAAAGGACCTGTCAGTGTGCGCATCGACTACAAGCAGC 162428 Query 92037 AGCAATTTTCCTTGGCTGGGAGCAAACAGAG---GTTTTCATCGGTCCTTCTCCTGTTGG 92093 || | || || |||| | |||| ||| | || || || || || ||| |||| Sbjct 162429 AGAAGTTCTCTCTGGCCG---GCAACCAGCGCTCCTTCCCAACGCTCTTTGCCCTCTTGG 162485 Query 92094 ACCATTACAT 92103 | ||||||| Sbjct 162486 AGTATTACAT 162495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356144024170696