Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq110 425 7e-114 seq784 120 4e-22 seq233 87.8 2e-12 >seq110 Length=1641499 Score = 425 bits (470), Expect = 7e-114 Identities = 1292/1979 (65%), Gaps = 31/1979 (2%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| |||||||| | ||| || | | | || || ||||| || ||||| | | Sbjct 1622977 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 1622918 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | | | | ||||| ||||| || || | || || ||||| |||| || || Sbjct 1622917 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 1622858 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 1622857 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1622798 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | || ||| | ||| Sbjct 1622797 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGAT 1622738 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | |||||| || | || Sbjct 1622737 CTTTTCCTTCAGCAGCTTCC-AGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGT 1622679 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || || || || | || || ||||| || || | | Sbjct 1622678 ACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG 1622619 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || || ||||| | || | | || ||||| ||||| |||| | | Sbjct 1622618 CGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 1622559 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || ||||| || || || || || | | || || || ||||| || | Sbjct 1622558 TGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCA 1622499 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| || ||||| || ||||| | ||| || ||| | || ||||| |||| Sbjct 1622498 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAA 1622439 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 1622438 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 1622379 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 || || || || || ||| ||| | || ||| ||| | ||| | | Sbjct 1622378 AGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGG 1622319 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||| || || ||||| ||||| | | || || || | | | || ||||| Sbjct 1622318 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT--GGTGTACTCCACCACCTCCGTGCA 1622261 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || ||||||||||| || | || || || || ||||| ||| || || || Sbjct 1622260 GAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTC 1622201 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 ||| || || || | || || || ||||| |||| || || || || || | ||||| Sbjct 1622200 CTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 1622141 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAA 71939 | || | ||||| | | |||| |||| ||| | || |||| ||||| | Sbjct 1622140 CTGCT-GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCT 1622082 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCA 71998 || |||||||| |||||||| ||| | ||| | ||||||||||| | |||||||||| Sbjct 1622081 TC--TCGAACTCCTCTCCCCA-GCACTCGTCCAGCCCAGGACATTCGCTGGGACACATCA 1622025 Query 71999 ATGACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 72056 | ||||| || | | || | |||| ||||| || || ||||| ||||| | || Sbjct 1622024 AGGACCAGTCCTGGTTGCTC-TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 1621966 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || ||| || ||||||| ||| |||||||| |||||||| ||||| || || || ||||| Sbjct 1621965 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 1621907 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | | || | ||||| || |||| || ||||| | | || || | ||||| Sbjct 1621906 CTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTT 1621847 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | || Sbjct 1621846 GCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCC 1621787 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| || ||||| || | ||| |||||||| | | || || ||| | | Sbjct 1621786 GTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATGCAGCTCACCGC 1621727 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || || || || || || || || | ||||| | || | || || ||||| Sbjct 1621726 CACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGAT 1621667 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 ||| || || || || ||| ||||| || || || || || |||| || | || | Sbjct 1621666 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTT 1621607 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || || || || | ||| ||||| ||||| || ||||| || || ||||| || || Sbjct 1621606 GGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTT 1621547 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| ||||| | || | || || || | || || || |||| || | ||| | Sbjct 1621546 GTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAG 1621487 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| |||| || | | || || || |||| || |||||| |||| Sbjct 1621486 CATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAG 1621427 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || || || ||||||| || || |||| |||||||| || || ||||| Sbjct 1621426 AGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAGTTGAG 1621367 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTT 72715 ||||| | || | || || || | || | |||| | || || ||||| || Sbjct 1621366 GCGGTCCTTGTTTTCCATGACGATGTCGAGCGTC-TGCTTGGAGATCATGGGAGAGTGG- 1621309 Query 72716 TCCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772 | || || ||| || |||||| ||| | ||||||||||| || || || | | Sbjct 1621308 --CGTTTGTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCT 1621251 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 | || || ||||| || || || || ||||| || || ||||| || ||||| || || | Sbjct 1621250 TCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGG 1621191 Query 72833 GATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTG 72892 | |||| || || ||||| || || || || || || ||||| | || || || | Sbjct 1621190 GGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGG 1621131 Query 72893 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 72952 | || || | || | || || || |||||||| | || | | ||||| | | | Sbjct 1621130 TGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGT 1621071 Query 72953 CAGTGTTTAAGCCATAACATAATTTTCTA-ATACGAGACGTGATTTTATCAAACATAAC 73010 | | ||| | ||| || || || |||| || || || ||||||||||||||||| || Sbjct 1621070 CCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 1621013 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||| | || ||||| || || ||||| ||| | || || || ||||| || | Sbjct 1623244 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 1623185 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||| || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 1623184 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 1623125 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 1623124 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 1623076 >seq784 Length=80426 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||||| ||||| |||||||| || |||||| ||| | || || || |||||||||| Sbjct 21016 TCCATCCATAAAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCAGCAATGTGAATAT 21075 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 21076 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTGAGGACAGTTT 21135 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 21136 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGG 21184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||||||||| || |||||||| | || | || || ||||||| ||| ||| Sbjct 24344 ACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGC 24403 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || || || | ||| | | | ||||| ||||||||| Sbjct 24404 TCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACATCAGCATGCCACGGC 24463 Query 72142 TCCAAGTA 72149 |||| ||| Sbjct 24464 TCCAGGTA 24471 >seq233 Length=880882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| || || | |||||| || || || |||||||| ||||| | ||| | Sbjct 603983 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 604042 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || ||||| ||||||||||| || || || || |||| Sbjct 604043 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 604102 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||||||||| Sbjct 604103 CCACCACTCTCTCTCC 604118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670966113200320