Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq13117 127 8e-25 >seq13117 Length=709 Score = 127 bits (140), Expect = 8e-25 Identities = 306/461 (66%), Gaps = 3/461 (1%) Strand=Plus/Plus Query 53018 GACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTT 53077 || ||||| ||||| || ||| || |||||||| |||||||||||||| || | Sbjct 145 GATCGCGTGAACCGGCATTTCACCGCCGAACGACCCGACCAGCTGTGGGTCAGCGACTAC 204 Query 53078 ACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCC 53137 || | ||| || ||||||||||| | ||| ||||||||| | || || || | ||| Sbjct 205 ACCTTCGTGTCGACCTGGCAGGGCTTTGCCTACGTGGCGTTCGTGATCGACGTCTATGCG 264 Query 53138 GGATACATTGTGGGGTGGCGGGTCTCATCGTCCATGGAGACGACATTCGTGCTGGATGCA 53197 | || || || ||| | | || |||||| | | || |||||||| || || Sbjct 265 AGGCGAATCGTCGGTTGGAAGCTGTCGTCGTCCCAGCAAACCCAGTTCGTGCTCGACGCC 324 Query 53198 CTGGAGCAGGCGTTATGGGCCCGTCGAC-CGTCCGGCAC--GGTCCATCACAGTGATAAA 53254 || ||||||||| | ||||| || | || | ||| | ||||| || || || Sbjct 325 CTCGAGCAGGCGCTGCACGCCCGCCGGCTCGGCAGGCCCCTTGTCCACCATAGCGACCGC 384 Query 53255 GGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTACTGGCA 53314 || || || || || ||| | ||||| ||||||| || ||||| | | Sbjct 385 GGGTCGCAATACGTGTCGATCCGATACACCGAGCGGCTGGCCGAGGCCGGCATCGAACCG 444 Query 53315 TCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTT 53374 || || || |||||||| || ||||||||| | ||||||| ||||||||| ||| Sbjct 445 TCGGTCGGCAGCGTCGGCGACTCCTACGACAACGCGCTCGCGGAGACCATCAATGGACTT 504 Query 53375 TACAAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCC 53434 ||||| ||||| || | ||||| |||| | ||| | || ||||| ||| Sbjct 505 TACAAGGCGGAAGTCGTGCACCGGCGTTCCTGGCGCAGCCGCGAGGAGCTGGAATTGGAA 564 Query 53435 ACACTCACGTGGGTGGACTGGTATAACAATCGACGATTGCT 53475 || || ||||| ||||||| ||| | || || |||| Sbjct 565 ACCCTGCGCTGGGTCGACTGGTTCAACCACCGGCGCCTGCT 605 Score = 116 bits (128), Expect = 1e-21 Identities = 257/383 (67%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 50178 GACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTT 50237 || ||||| ||||| || ||| || ||||| || |||||| ||||||| || | Sbjct 145 GATCGCGTGAACCGGCATTTCACCGCCGAACGACCCGACCAGCTGTGGGTCAGCGACTAC 204 Query 50238 ACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCC 50297 |||| || || ||||||||||| | || ||||||||| | || || || | || Sbjct 205 ACCTTCGTGTCGACCTGGCAGGGCTTTGCCTACGTGGCGTTCGTGATCGACGTCTATGCG 264 Query 50298 GGATACATCGTGGGATGGCAGGTCTCATCATCCATGGAAACAACATTCGTGCTGGATGCA 50357 | ||||| || ||| || | || || ||| | |||| |||||||| || || Sbjct 265 AGGCGAATCGTCGGTTGGAAGCTGTCGTCGTCCCAGCAAACCCAGTTCGTGCTCGACGCC 324 Query 50358 CTGGAGCAGGCGTTGTGGGCCCGTCGGC-CGTCCGGCAC--AATCCATCACAGTGATAAA 50414 || ||||||||| || ||||| |||| || | ||| | |||| || || || Sbjct 325 CTCGAGCAGGCGCTGCACGCCCGCCGGCTCGGCAGGCCCCTTGTCCACCATAGCGACCGC 384 Query 50415 GGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCTTAAGGAAGCCGGATTACTGGCA 50474 || || || || || ||| | ||||| ||||||| || ||||| | | Sbjct 385 GGGTCGCAATACGTGTCGATCCGATACACCGAGCGGCTGGCCGAGGCCGGCATCGAACCG 444 Query 50475 TCAACAGGGAGTACTGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGGTCTT 50534 || || || |||||||| || ||||||||| | || |||| ||||||||| ||| Sbjct 445 TCGGTCGGCAGCGTCGGCGACTCCTACGACAACGCGCTCGCGGAGACCATCAATGGACTT 504 Query 50535 TACAAAGCGGAGGTAATACACCG 50557 ||||| ||||| || | ||||| Sbjct 505 TACAAGGCGGAAGTCGTGCACCG 527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185209011745728