Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq176 168 2e-36 seq9982 158 3e-33 seq54 143 6e-29 >seq176 Length=1137095 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | || || || || | || || || ||||| || || ||||| || Sbjct 797729 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 797670 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 797669 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 797610 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||||||||||||||||||||| || || || || | |||||| || || || || Sbjct 797609 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || || ||||| ||||| || ||||| || || |||||||| || Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 >seq9982 Length=962 Score = 158 bits (174), Expect = 3e-33 Identities = 176/234 (75%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | |||||||||||||| || || ||||| Sbjct 950 ATACCACCCCTGAGACGAAGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCG 891 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTG-TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 || || || | || ||||| || || ||| || ||||| || |||||||| || ||||| Sbjct 890 GACAGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGG 831 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || |||||||| || || || || ||||| || | ||| ||||| ||||| Sbjct 830 GGGGATGCCCTCCTTATCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGTTC 771 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || || |||||||| || || || ||||| |||||||| || Sbjct 770 CACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 717 >seq54 Length=2421293 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| || ||||| ||| Sbjct 1259646 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 1259587 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || ||||||||||| || || || || Sbjct 1259586 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTG 1259527 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| ||||| ||||| || || || || || || || || || Sbjct 1259526 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 1259467 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 1259466 TTGACAAAGATTTGCAT 1259450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151094030711456