Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq28 136 3e-27 >seq28 Length=3093535 Score = 136 bits (150), Expect = 3e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||||| |||||||||| ||||| | |||||| ||||| || ||||| ||||| ||||| Sbjct 1720805 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTC 1720864 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || ||||| | |||||| || ||||| ||||| | ||| || |||||||| Sbjct 1720865 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 1720924 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 1720925 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 1720972 Score = 104 bits (114), Expect = 2e-17 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || || |||||||| ||||| || |||||||||||||| || || Sbjct 1719918 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 1719977 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| | ||||||| | | || | |||||| |||||||| || ||||| |||||| Sbjct 1719978 ACCCCCAGACCCATGT-CGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCA 1720036 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 ||||| |||||||| | || || ||| || || || || || Sbjct 1720037 GACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 1720078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340052071550136