Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq88 89.7 3e-13 seq7 89.7 3e-13 seq274 86.0 3e-12 seq183 82.4 4e-11 seq96 82.4 4e-11 seq39 82.4 4e-11 >seq88 Length=1851929 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||| ||| ||| |||||| | |||||||||| ||||||| |||||||||||| Sbjct 570011 TAATAATAAAA-AAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 570069 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 570070 CCACGCTCTAACCAACTGAGCTAACCGGCC 570099 >seq7 Length=5172361 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| || |||||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 3562773 AAAAAACAGCATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 3562714 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||| |||||| Sbjct 3562713 GCTCTAACCAACTGAGCTAACCGGCCGT 3562686 >seq274 Length=730497 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 563815 AAAAAGAAAATGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 563874 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 563875 GCTCTAACCAACTGAGCTAACCGGCC 563900 >seq183 Length=1085500 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 827313 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 827372 Query 11528 CC 11529 || Sbjct 827373 CC 827374 >seq96 Length=1780666 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 95242 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 95183 Query 11528 CC 11529 || Sbjct 95182 CC 95181 >seq39 Length=2773519 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 436553 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 436494 Query 11528 CC 11529 || Sbjct 436493 CC 436492 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261425447384032