Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq105 159 5e-34 seq57 116 5e-21 seq29 105 9e-18 >seq105 Length=1692671 Score = 159 bits (176), Expect = 5e-34 Identities = 202/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 |||| |||||| | || ||||| ||| | | || | |||||||| |||| || Sbjct 1168153 CCTTGAACGTTGTTGCAAACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 1168094 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 || || || ||||||||||| |||||||| | || ||||| ||| ||| |||| Sbjct 1168093 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGATTCCCCATC 1168034 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 |||||||||||||| || |||||||||| ||| | || |||| || || |||||||| Sbjct 1168033 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 1167974 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAA 8938 | |||||||| ||||| | | ||| ||| | ||||||||| || | |||||| || Sbjct 1167973 GACCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGCTCCACAGCGTCAACGTCTCCATAC 1167914 Query 8939 AGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || ||| ||| || ||||| ||||||||||| Sbjct 1167913 AGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 1167876 Score = 129 bits (142), Expect = 8e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| |||| ||||||||| ||| ||||||| ||| ||||| || Sbjct 1166554 TCACCAATAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 1166495 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| ||| || ||||| | |||||| || | ||||||||| || ||||||||| Sbjct 1166494 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 1166435 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| || || ||||| || || ||||| || || ||||| Sbjct 1166434 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 1166394 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | ||| ||||| ||||| ||||| ||||| || | | Sbjct 1165576 TCACCTACGACTCCCATAGGGGTTGGGCAATCAGCCGGAACTGGAGGAAGGGCACGGGTA 1165517 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| | |||||||||||| |||| | || ||||| ||||| | Sbjct 1165516 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAAGTA 1165457 Query 10407 GGAGGGCTGTCAATCAAATCGGATC 10431 ||||| |||||||||| || ||||| Sbjct 1165456 GGAGGACTGTCAATCATATGGGATC 1165432 >seq57 Length=2403620 Score = 116 bits (128), Expect = 5e-21 Identities = 140/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 8752 AAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTT 8811 |||||| | || || |||||||||||||| |||||||| | || ||| |||| || Sbjct 1630393 AAACCCGTC-TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATT 1630335 Query 8812 CGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGAT 8871 | | | |||||||| ||||| || || || |||| ||| | |||||||| ||||| || Sbjct 1630334 CCCAAACAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATAT 1630275 Query 8872 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTC 8931 || |||||| || | || |||| || || |||| || ||||||| || || ||||| Sbjct 1630274 GGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCGGGATAAAACTCCAGGGCGTCAATGTC 1630215 Query 8932 TCCGTAAAG 8940 ||||| || Sbjct 1630214 GCCGTAGAG 1630206 >seq29 Length=3056709 Score = 105 bits (116), Expect = 9e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || ||||| |||||||| |||||||| || ||||| || ||| ||| ||| ||||||| Sbjct 1640053 CCTCCGAATGTGCTGGGCTTCCAGTATCCTGGGGAACATATGGGGTTACCCAGGAGGCCT 1639994 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 ||||||||||| || || |||| || | ||||| || || || || || || || Sbjct 1639993 TTGAGGGAAAAGGGGGCACCCATTTCCACCATGCTTTCTCCAAATATCGCCCCTGGTCGA 1639934 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 | | | |||| || || |||| ||| || || | || |||||||| ||||| || Sbjct 1639933 GTCCTCTCCAGCAGTAACCCGGGGTAAAATTCAAGAGTGTCGATGTCCCCGTAGAG 1639878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708342071454080