Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq176 127 2e-24 seq9982 104 2e-17 seq54 102 7e-17 >seq176 Length=1137095 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| |||| || | ||||| ||| | || || ||||| || | ||| || ||| Sbjct 797729 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 797670 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | ||| ||||||||||| || ||||||| | || ||||| || ||||| Sbjct 797669 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 797610 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| |||||||| || | ||| |||||||| ||| | | || ||| | | || || Sbjct 797609 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || |||||||| || |||||||| Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 >seq9982 Length=962 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||||||||| || || | ||| || ||| || ||| | ||| |||||||| Sbjct 924 GTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 865 Query 94864 TTTT-CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTT 94922 ||| ||| ||||||| | || ||||| || || || || || || || || | |||| Sbjct 864 CTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTT 805 Query 94923 TTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAG 94982 | |||||||| | | ||||| | | || || || | ||||||||||| |||| Sbjct 804 TAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAG 745 Query 94983 TAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || || || ||||||||||||||| || Sbjct 744 TGAGGGTCTTGACAAAGATCTGCATGTTT 716 >seq54 Length=2421293 Score = 102 bits (112), Expect = 7e-17 Identities = 172/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 94762 TTTTTTAAAAT--TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 ||||||| ||| ||||| || || |||| || | || | ||| | || ||||| Sbjct 1259697 TTTTTTAGAATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCT 1259638 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || || | ||| || ||| || ||| | ||| ||||||||||| || ||||||| Sbjct 1259637 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATC 1259578 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 | || ||||| || || || || || ||||| || | ||||| ||||||||| | Sbjct 1259577 AGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCA 1259518 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | ||||| | | || || || | ||||||||||| || || || || || |||||| Sbjct 1259517 ATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAG 1259458 Query 95000 ATCTGCAT 95007 || ||||| Sbjct 1259457 ATTTGCAT 1259450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | || || ||| || ||| | ||| |||||||| |||||| Sbjct 1257637 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 1257578 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| || || || || || || || || | || || ||||| Sbjct 1257577 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 1257518 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | || ||| | | || || || | ||||||||||| || || || ||| Sbjct 1257517 ACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 1257458 Query 94991 TTCACAAAGATCTGCATGCTTACAACA 95017 ||||||||||||||||| ||| || || Sbjct 1257457 TTCACAAAGATCTGCAT-CTTGCACCA 1257432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448175585699520