Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq434 172 9e-39 seq251 165 1e-36 seq44 163 4e-36 seq5716 156 7e-34 seq358 132 8e-27 >seq434 Length=359018 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 127963 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 128022 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 128023 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 128082 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 128083 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 128142 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 128143 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 128202 Query 16672 CCG 16674 ||| Sbjct 128203 CCG 128205 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 148440 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 148381 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 148380 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 148321 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 148320 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 148261 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 148260 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 148201 Query 16672 CCG 16674 ||| Sbjct 148200 CCG 148198 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 117066 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 117125 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 117126 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 117185 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 117186 CCGCGGTGTGCTCAAAGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 117245 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 117246 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 117305 Query 16672 CCG 16674 ||| Sbjct 117306 CCG 117308 >seq251 Length=796500 Score = 165 bits (182), Expect = 1e-36 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 276055 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 276114 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 276115 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGAC 276174 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || || ||||| Sbjct 276175 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACGTACACCGA 276234 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 276235 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 276294 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || || ||||| || Sbjct 276295 CCGCACTCTGTACGGCTTCGGGGGTTAAACT 276325 Score = 165 bits (182), Expect = 1e-36 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 277307 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 277366 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 277367 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGAC 277426 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || || ||||| Sbjct 277427 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACGTACACCGA 277486 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 277487 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 277546 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || || ||||| || Sbjct 277547 CCGCACTCTGTACGGCTTCGGGGGTTAAACT 277577 >seq44 Length=2693125 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 102153 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 102212 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 102213 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGAC 102272 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || || ||||| Sbjct 102273 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACGTACACCGA 102332 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 102333 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 102392 Query 16672 CCG 16674 ||| Sbjct 102393 CCG 102395 >seq5716 Length=3536 Score = 156 bits (172), Expect = 7e-34 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 2452 CGCCAAGCGCCACCGTAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCGGCAAT 2393 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 2392 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 2333 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || | || ||||| Sbjct 2332 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 2273 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 2272 GCACGCAAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 2213 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 2212 CCGCACTCTGTACGGCTTCGGAGGTTAAACT 2182 >seq358 Length=502766 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 401888 CGCCAAGCGGCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 401829 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || ||||||||||| |||| || || |||| || |||| Sbjct 401828 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 401769 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || | || || || Sbjct 401768 CCGCGGCGTGCTGAAGGTGTTCCTAGAGAACGTGATCCGTGACGCCGTGACGTACACGGA 401709 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 401708 GCACGCCAAGAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 401649 Query 16672 CCG 16674 ||| Sbjct 401648 CCG 401646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056336017976