Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq110 452 5e-122 seq233 105 8e-18 seq17 93.3 5e-14 seq784 84.2 3e-11 >seq110 Length=1641499 Score = 452 bits (500), Expect = 5e-122 Identities = 1295/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| |||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 1622977 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 1622918 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | | | | ||||| || || || || | || || ||||| |||| || || Sbjct 1622917 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 1622858 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 1622857 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1622798 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | |||| | | ||||| Sbjct 1622797 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGAT 1622738 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | |||||| || | ||| | | Sbjct 1622737 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 1622680 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || || || || || ||| || ||| || | || || ||||| || || || Sbjct 1622679 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 1622620 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 | || || || || || ||||| | || ||| || ||||| |||||||||| | Sbjct 1622619 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 1622560 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || ||||| | || || || || | | || || || ||||| || Sbjct 1622559 TTGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCC 1622500 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | || || || || || ||||| || || || | ||| || || | || ||||| ||| Sbjct 1622499 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGA 1622440 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 1622439 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 1622380 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACA 62897 ||| || || || || || ||| | || ||||||| | ||| | Sbjct 1622379 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 1622320 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 62955 || ||||| || || ||||| ||||| | | | | | || | | | ||| |||| Sbjct 1622319 GAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCCGTGC 1622262 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | || || || |||||||| || || | || || || || ||||| ||| || || | Sbjct 1622261 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 1622202 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 1622201 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 1622142 Query 63076 -CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA--GTGTATACA 63132 | || | ||||| | | || ||||| ||| | || ||| ||||| | Sbjct 1622141 GCTGCT-GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 1622083 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 || |||||||| |||||||| | ||||| ||||||||||| |||||||||| Sbjct 1622082 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTGGGACACATCA 1622025 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63251 | ||||| || || || ||||| ||||| || || ||||| ||||| | || | Sbjct 1622024 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 1621965 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | ||| || ||||||| ||| || ||||| |||||||| ||||| || || || |||||| Sbjct 1621964 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAC 1621906 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | || | ||||| || |||| || ||||| | | || || | ||||| Sbjct 1621905 TCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTG 1621846 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | ||| Sbjct 1621845 CCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCG 1621786 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | || ||||| || | ||| |||||||| | | || || || | | Sbjct 1621785 TTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATGCAGCTCACCGCC 1621726 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | || || || || || || || || | ||||| | || | ||||| ||||| Sbjct 1621725 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 1621666 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 || || ||||| || || ||||| || || || || || |||| || | || | Sbjct 1621665 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG 1621606 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 1621605 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 1621546 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||| | || | ||| || || | || || || || | || | ||| | | Sbjct 1621545 TAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 1621486 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||| |||| || | | || ||| || |||| || |||||| |||| | Sbjct 1621485 ATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGA 1621426 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 || || || || || ||||||| || || |||| |||||||| || |||||||| Sbjct 1621425 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAGTTGAGG 1621366 Query 63852 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTTT 63910 ||||| | || | || || || | || | |||| | || || ||||| || Sbjct 1621365 CGGTCCTTGTTTTCCATGACGATGTCGAGCGTC-TGCTTGGAGATCATGGGAGAGTGG-- 1621309 Query 63911 CCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63967 | || || ||| || |||||| ||| | ||||||||||| || || || | || Sbjct 1621308 -CGTTTGTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCTT 1621250 Query 63968 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64027 || || ||||| || || || || ||||| || || ||||| || ||||| || || || Sbjct 1621249 CTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 1621190 Query 64028 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 64087 |||| || || ||||| || || || || || || ||||| | || || || || Sbjct 1621189 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGT 1621130 Query 64088 TACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64147 || || | || | || || || |||||||| | || | | ||||| | | || Sbjct 1621129 GACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 1621070 Query 64148 CGTGTTTAAGCCATAACATAATTTTCTA-ATACGAGACGTGATTTTATCAAACATGAC 64204 || ||| | ||| || || || |||| || || || |||||||||||||||||||| Sbjct 1621069 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 1621013 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 1623244 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 1623185 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 1623184 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 1623125 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 1623124 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 1623076 >seq233 Length=880882 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 603983 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 604042 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| ||||| || ||||| ||||||||||| || || || || |||| Sbjct 604043 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 604102 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||||||||| Sbjct 604103 CCACCACTCTCTCTCC 604118 >seq17 Length=3631609 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||||| ||||||||||| | || || || ||||| ||||| | ||| | Sbjct 3277046 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 3276987 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| | || | ||||||||| || || ||||| || || || ||||| ||||| | Sbjct 3276986 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 3276927 Query 33446 CAATAAGTCTCTCTCC 33461 | | ||| | ||| || Sbjct 3276926 CCACAAGACGCTCCCC 3276911 >seq784 Length=80426 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||| ||||||||||| || |||||||| | || | || || ||||||| ||| || Sbjct 24343 CACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTG 24402 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || || || || ||||| || || || | ||| | | | ||||| ||||||||| Sbjct 24403 CTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACATCAGCATGCCACGG 24462 Query 63335 TTCCAAGTA 63343 |||| ||| Sbjct 24463 CTCCAGGTA 24471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622786541917120