Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq110 192 2e-43 seq784 86.0 2e-11 >seq110 Length=1641499 Score = 192 bits (212), Expect = 2e-43 Identities = 597/911 (66%), Gaps = 35/911 (4%) Strand=Plus/Plus Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651 || ||| |||| |||||| || || ||||||||||| |||||| || |||| Sbjct 1621613 CCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTAC 1621672 Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711 ||||| || ||| | || || || ||||||||| || ||||| || || || || | Sbjct 1621673 GACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTG 1621732 Query 363712 CACAATGTTCGTGC-ACAGAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGC 363769 | | || | |||| | || ||||| ||| ||||| || |||| || ||| Sbjct 1621733 AGCTGCATCCGATCGACAGGA-AGCTACAT-CGCAGGCACCAACGGCAACTCCAACGGGT 1621790 Query 363770 TGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAA 363829 |||| || ||||| | || | |||| || || |||||||||||||||| || | Sbjct 1621791 TGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTACGTCGACCAGGGCGGCAACA 1621850 Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 || | ||||| || || |||||||| ||||| || ||| | |||||||| | Sbjct 1621851 AGAGACCCGGGGCCTTCGCCATGTATCTGGAGCCATGGCACTTCGACGTGTTTGAGTTCC 1621910 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 | ||||| ||| ||||| ||||| ||||| | | || | || || ||||| || Sbjct 1621911 TGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCT 1621970 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTT 364008 | ||| | |||||| || |||||| | |||||| ||| || | ||||| | | Sbjct 1621971 TGTGGATCCCTGACCTGTTCATGAAGAGAGTGGAGAGCA-ACCAGGACTGGTCCTTGATG 1622029 Query 364009 TGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTAT 364066 || || ||||||||| || || ||| ||||| || || | | |||||| Sbjct 1622030 TGTCCCAGCGAATGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTAC 1622089 Query 364067 ACGAAA----AGTATGAATCG-GAGGGAA-AGGCTCGT-AAGACAATTCCCGCACAGAAG 364119 || ||| || | ||| | ||| ||| ||| | || ||| || ||| || Sbjct 1622090 ACCAAATATGAGAAGGAAGGGAGAGTGAAGAGGGTGGTGAAG---------GCGCAGCAG 1622140 Query 364120 CTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAA 364179 || |||| |||||||| || || |||| || || || || ||||| ||| | ||||| Sbjct 1622141 CTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTACAAG 1622200 Query 364180 GATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTA 364239 || | |||||||| ||| |||||||||| |||| || || || || |||||||| Sbjct 1622201 GACGCTTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTC 1622260 Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299 || || ||| | | || |||||| |||||| ||||| || ||||| || || Sbjct 1622261 TGCACGGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGGCCTCC 1622320 Query 364300 ATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACTTTTGACCACCAGCATCTTTATGAC 364356 ||||| || || || | ||| | ||||| ||| | || | || | Sbjct 1622321 ATCGCCCTCAACATGTACGTCACGCCAGAGCGGACTTTCGACTTCAAGAAGCTGGCCTCC 1622380 Query 364357 GTAACCTATCATGCTACTTG----CAATCTCGACAAGGTTATCGACAAGAATTATTATCC 364412 || || || | || | | || ||| ||||| | ||||||| || || || || Sbjct 1622381 GTCAC----CAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAACTACTACCC 1622436 Query 364413 AATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGG 364472 |||||||||| ||| ||| || | ||| || | ||||| || | || || ||||| Sbjct 1622437 GGTTCCTGAAGCGGAGACTTCCAACAAGCGCCACAGGCCGATCGGGATCGGCGTCCAGGG 1622496 Query 364473 CCTCGCTGACG 364483 || || |||| Sbjct 1622497 TCTGGCCGACG 1622507 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 ||||||||||||||||| || || || |||||||| || |||||||||| | |||| || Sbjct 1622774 GCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCG 1622833 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| |||| || |||||||| || | | | || || Sbjct 1622834 TACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCGTCAACCCT 1622893 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 |||| |||||||||| | || ||||| |||||| || ||||||||| | | Sbjct 1622894 CACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAAGAACAAGCTG 1622953 Query 364930 ATCGC 364934 ||||| Sbjct 1622954 ATCGC 1622958 >seq784 Length=80426 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 |||||| || || |||| || ||||| ||||| ||| | ||||||||| | ||||| Sbjct 24487 AGGGGCCTTCTCTGTGTACCTGGAGCCGTGGCATGCTGATGTGTTTGAGTTTTTGGAGCT 24428 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| |||||||| ||||| || | | || | || ||||||| ||| | ||| | Sbjct 24427 GAAGAAGAACACGGGTAAAGAAGAGCAGAGAGCCAGAGACCTGTTCTTTGCCTTGTGGAT 24368 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGA 363983 | | |||| ||||||||||| ||||| Sbjct 24367 TCCAGACCTCTTTATGAAGCGAGTGGA 24341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303009061734224