Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9982 89.7 4e-13 seq176 89.7 4e-13 >seq9982 Length=962 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| ||| | || ||| | || || || || Sbjct 717 AACATGCAGATCTTTGTCAAGACCCTCACTGGTAAAACCATCACCCTGGAGGTGGAACCC 776 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||| ||| | ||||| || || || || || ||||| || || || Sbjct 777 AGCGACACCATTGAGAATGTCAAGGCTAAAATCCAGGATAAGGAGGGCATCCCCCCTGAC 836 Query 24108 CAACAGAGACTGATTTACGGCGGCAA-GCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| ||||| | | |||||| ||| || ||||||| | | | | | ||| || Sbjct 837 CAGCAGAGGCTGATCTTTGCCGGCAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 896 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||||||||| Sbjct 897 CAACATCCAGAAAGAATCTAC 917 >seq176 Length=1137095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| | ||||| || | || ||| | || || ||| || Sbjct 797499 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 797558 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | || ||||| ||| | || || ||||||| || ||||||||||| ||||| || Sbjct 797559 AGTGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGAC 797618 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | | ||||| || || ||||||| | | | | | ||| || Sbjct 797619 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 797678 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGAC 24219 ||||| || || || || || | || | ||| | | |||| ||||||| Sbjct 797679 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGGAC 797730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429827891517960