Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq110 248 8e-61 seq784 113 4e-20 seq176 113 4e-20 seq4001 86.0 6e-12 >seq110 Length=1641499 Score = 248 bits (274), Expect = 8e-61 Identities = 980/1512 (65%), Gaps = 50/1512 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||| ||||| |||| || ||| | || || | ||| ||| | | Sbjct 1622889 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 1622830 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || ||||||||| ||||| | Sbjct 1622829 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 1622770 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| || |||| | |||||| ||| ||| ||||| Sbjct 1622769 AGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCAA 1622710 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || |||||| || ||||||||||||||||| | ||||||| |||| |||| | Sbjct 1622709 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG 1622650 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| | || || | | |||||||||||| || |||||||| | Sbjct 1622649 CCCTCGTACGTCTCGTA--GGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGG 1622592 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| || || ||||||||||| ||||| || ||| Sbjct 1622591 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGA 1622532 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| |||| ||| | || || ||||| || ||||| | || | ||||| |||| Sbjct 1622531 ACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 1622472 Query 145476 GATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| ||| | || || | ||| | | ||| |||||| Sbjct 1622471 TGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTA-GTTGAT----GTCGAT 1622417 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 || || || | |||| ||| | |||||| || | | || ||| | ||||| || Sbjct 1622416 GATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA 1622357 Query 145591 ---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| ||| || | ||| | |||| |||||| || |||| || || || Sbjct 1622356 AGTCCG---CTCTGGCGTGA-CGTACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGAC 1622303 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 ||| ||| || | | |||| | || | ||| | ||| | ||||| || ||||| Sbjct 1622302 GGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGAT 1622243 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||| ||||| || ||||| || || |||| |||||| |||||||||||||||||||| || Sbjct 1622242 GGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGG 1622183 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACC 145825 || || || ||| | ||| | ||| || || || | |||||| |||| Sbjct 1622182 GGTCCCGGTTTCGGTCTGGGACTCGATGAT--GGCGTACCAGAGCTGCTGCGCCTTCACC 1622125 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 | || | || || | || ||||| ||||||||| ||| ||| | || Sbjct 1622124 ACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC 1622065 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 |||| ||| ||| || ||||| | | |||||||||||| ||||| | |||| Sbjct 1622064 CAGCACTCGTCCAGCCCAGGACATTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTC 1622005 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTT 146003 | || | || ||| |||| || || | ||||| ||||| | | ||| | || || Sbjct 1622004 TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTC 1621945 Query 146004 TGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGC 146062 ||| ||||| || |||| ||||| | || | ||| | | | ||| |||| Sbjct 1621944 TGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGA-ACTCAAACACGTCGAAGTGC 1621888 Query 146063 CACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGA 146119 || || || | ||| | ||||| ||| || | || | ||||| |||||||| |||| Sbjct 1621887 CATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAC 1621828 Query 146120 CGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA 146179 || | ||||||| | || | || ||| ||| | | ||| ||| |||||| || Sbjct 1621827 CGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTG 1621768 Query 146180 GAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCG 146239 || | | || || || | ||| || |||||||| ||||| || Sbjct 1621767 CCTGCGATGTAGCTTCCTGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCG 1621708 Query 146240 TACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG-- 146296 ||||||| || ||| ||||| | || || ||||||||||| || ||||| ||| Sbjct 1621707 GACTTGGAAATGAGC-GCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTC 1621649 Query 146297 CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGAGA 146354 |||| ||| ||||||| ||||| | ||| ||||| | ||| ||||| || || Sbjct 1621648 CTTC--ATGGCGAGCAGGAAGCAACTGGACAGCTGCGGC--CGGTTGGTCCCGGCGTTGA 1621593 Query 146355 ACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 | | ||||| ||||| || || || || || | || | || || |||| Sbjct 1621592 AGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGGAGGTTGTAGGTCTCGACG 1621534 Query 146414 GCGTCTTGAATGTCGTCG-CCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGG 146472 ||| | | ||||| ||| || || || || | | || | |||||||||||| || || Sbjct 1621533 GCGGCGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 1621475 Query 146473 CCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCC 146532 ||||| ||||||| || ||||| | || ||| |||||| || ||| | || Sbjct 1621474 TCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCC 1621415 Query 146533 GAAAAATTTGTA 146544 ||| || ||||| Sbjct 1621414 GAAGAAGTTGTA 1621403 >seq784 Length=80426 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| || ||||| | ||| | |||||| | |||||||| |||||||||||||| | Sbjct 23889 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 23948 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | | ||||||||||| ||||||||||||||||||||||| || ||||| ||||| Sbjct 23949 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCG 24008 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 24009 ACTCGATGAT 24018 >seq176 Length=1137095 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||| ||| || |||||| Sbjct 797716 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 797657 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||| ||||| || |||| | | ||||||||| ||||| || |||||||| Sbjct 797656 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 797597 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | ||| || | | ||| | ||||| ||| ||| | || | ||| | Sbjct 797596 TCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGAT 797538 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || ||||| |||||||||||||| Sbjct 797537 GGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 >seq4001 Length=6841 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||| |||||||| || || ||||| ||| Sbjct 6662 GCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 6721 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | | ||||||||| || || Sbjct 6722 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 6781 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 ||| || || || || ||| || ||||| | ||| | || ||| ||| ||| Sbjct 6782 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTC 6838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471891067898880