Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq176 120 2e-22 seq54 109 4e-19 seq9982 95.1 1e-14 >seq176 Length=1137095 Score = 120 bits (132), Expect = 2e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| | | || Sbjct 797713 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 797654 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| |||||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || Sbjct 797653 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 797594 Query 16844 GCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||| |||| |||||| | | | || || | ||||||| |||| |||||||| Sbjct 797593 TGAATCTTTGC--CTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGG 797536 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || || ||||| || ||||||||||| || Sbjct 797535 TCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 >seq54 Length=2421293 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || || || ||||||||||||| || ||| | | || |||| ||| Sbjct 1259652 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGT 1259593 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| || | ||||||||| || |||| Sbjct 1259592 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTG 1259533 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||||| ||| ||| |||| |||||||||||| ||||| Sbjct 1259532 GCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTG 1259473 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || ||||| Sbjct 1259472 AGGGTCTTGACAAAGATTTGCAT 1259450 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || || |||||||||| || ||| | | || |||| || Sbjct 1257643 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 1257584 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || |||| ||| ||||| || | |||||| || || || || Sbjct 1257583 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTG 1257524 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | || || | ||| ||| |||| |||||||||||| |||| Sbjct 1257523 GC--CTTAACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGG 1257466 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || ||||| ||||| |||||||| ||| Sbjct 1257465 TGAGGGTTTTCACAAAGATCTGCATCTTG 1257437 >seq9982 Length=962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG- 16791 || || || || || || || ||||||||||||| || ||| | | || |||| || Sbjct 923 TGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 864 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851 |||||| ||| | || |||| ||| ||||| || | |||||| || || |||| Sbjct 863 TTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 804 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 ||| || | | | ||||||| ||| ||| |||| |||||||||||| || || Sbjct 803 AGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGT 744 Query 16912 CAGCGTTTTGACAAAAATCTGCATTTT 16938 || || |||||||| |||||||| || Sbjct 743 GAGGGTCTTGACAAAGATCTGCATGTT 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404986139609680