Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq364 125 5e-24 seq2335 118 7e-22 seq14 111 1e-19 seq247 104 2e-17 seq239 104 2e-17 seq6684 95.1 8e-15 seq6660 95.1 8e-15 seq176 82.4 5e-11 >seq364 Length=487702 Score = 125 bits (138), Expect = 5e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 371270 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACG 371211 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| ||| | | |||| ||||||| | ||||| || | Sbjct 371210 ATCGTTACATCGTCAACGGATCCCATGAGGCGAACAAGTTGCAGGATATGCTTGATGGGT 371151 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || ||||| ||||| || || || || Sbjct 371150 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGCGACAACCCTGAAACTGACCT 371099 >seq2335 Length=16437 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 13454 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 13513 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 13514 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 13548 >seq14 Length=4112360 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 3477983 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 3477924 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| |||||||||||||||||||||||| || Sbjct 3477923 TCATCCATTCATGCGCGTCACTAATTAGATGGCG 3477890 >seq247 Length=823891 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||| | Sbjct 744826 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCAT 744885 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| || ||| ||||||||||||||||||||| Sbjct 744886 TCATCCATTTATGTGCGTCACTAATTAGATGACGA 744920 >seq239 Length=844703 Score = 104 bits (114), Expect = 2e-17 Identities = 80/94 (85%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||| ||||||||||||||| ||| | || ||||| || |||||||| Sbjct 338026 AAGCCAGTTCCCT-GGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 338084 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||||||||||||||||||||||||| Sbjct 338085 TCATCCATTCATGCGCGTCACTAATTAGATGACG 338118 >seq6684 Length=2370 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| | Sbjct 2213 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTCTTCTATTGGTCTCAC 2154 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 2153 ATTCGTATTTAGCCTTA 2137 >seq6660 Length=2398 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| |||||||||| |||| |||||| | Sbjct 2240 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTCTTCTATTGGTCTCAC 2181 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 2180 ATTCATATTTAGCCTTA 2164 >seq176 Length=1137095 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| || | ||||| || || ||| |||||| || || ||||| || ||| Sbjct 797728 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 797669 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || ||||| || || | || || || | || Sbjct 797668 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 797609 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| ||| ||| |||||| |||| | ||||| | || || Sbjct 797608 ATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACC 797549 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || || | |||||||||||| |||||||| || Sbjct 797548 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334862976689192