Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq110 105 1e-17 seq11545 93.3 9e-14 seq5702 93.3 9e-14 seq132 93.3 9e-14 seq506 91.5 3e-13 seq287 91.5 3e-13 seq16 91.5 3e-13 seq614 89.7 1e-12 seq44 87.8 4e-12 seq11 86.0 1e-11 seq138 84.2 4e-11 >seq110 Length=1641499 Score = 105 bits (116), Expect = 1e-17 Identities = 587/927 (63%), Gaps = 23/927 (2%) Strand=Plus/Minus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||| | ||| ||||||||| | || || ||||| | || | |||||| |||| Sbjct 1622679 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 1622620 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | ||||||||| ||||| | || || ||| ||| ||||||||||| | Sbjct 1622619 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 1622560 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 |||||| |||| | | || ||||| | || | ||| ||| | || | Sbjct 1622559 TTGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCC 1622500 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 |||||||| || || | || | || | | ||||||||| ||||| || || ||| Sbjct 1622499 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGA 1622440 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGACATGC 293826 |||| || | | || ||| || ||| ||||| ||| || |||||| || Sbjct 1622439 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG--TGA 1622382 Query 293827 TTGCGG--AGGTCCTCAAAGTCAAATGCA---TCATTCTTGACATAGTTCTTGAGCACGA 293881 | || || | || ||||| || | || | |||| || | ||||| ||| Sbjct 1622381 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGA 1622322 Query 293882 TGCTACCGATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCAC 293941 || | | | || || || ||| ||||| ||||||||| || | ||| | | Sbjct 1622321 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 1622262 Query 293942 AGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTGT 294001 ||||||| |||| ||||||||||||| || ||| || |||| ||| | || Sbjct 1622261 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 1622202 Query 294002 CTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGA 294061 | |||| ||| | || || | || ||||| |||| | || |||| || ||||| Sbjct 1622201 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 1622142 Query 294062 CATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCT 294121 | | ||||||||||| | ||| | |||| || |||||| |||||||| |||| Sbjct 1622141 GCTGCTGCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCT 1622082 Query 294122 CTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGA 294180 ||| | |||| || | || ||| ||||| || ||| ||| || | | Sbjct 1622081 TCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCG-CTGGGACACATCAAG 1622023 Query 294181 GACCA---CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCG 294237 ||||| |||| | ||||||| | ||||||||| || ||| || ||||| ||| Sbjct 1622022 GACCAGTCCTGG---TTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 1621966 Query 294238 TAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCT-TGAT-TACGACGGAGGAGCAGGA 294295 || || | || | ||| | | | ||||| ||| || | | | | || ||||| Sbjct 1621965 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTC--AGCTCCAGGA 1621908 Query 294296 AGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCC---CTTCCTGC 294352 | || | | |||| || || |||||||||| || |||| ||| || || Sbjct 1621907 ACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGT 1621848 Query 294353 GTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGC 294412 || ||||||| | |||| || ||| ||| | || ||||||| ||||| | | Sbjct 1621847 TGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACC 1621788 Query 294413 CATCGGACTCACCATTGGTTCC-GCGA 294438 | | ||| | || ||||| || |||| Sbjct 1621787 CGTTGGAGTTGCCGTTGGTGCCTGCGA 1621761 >seq11545 Length=817 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 480 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 421 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 420 GCCCCACGTTGGGC 407 >seq5702 Length=3560 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 480 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 421 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 420 GCCCCACGTTGGGC 407 >seq132 Length=1449191 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 536153 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 536094 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 536093 GCCCCACGTTGGGC 536080 >seq506 Length=257136 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 227413 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 227354 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 227353 CCCCACGTTGGGC 227341 >seq287 Length=683463 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 628882 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 628823 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 628822 CCCCACGTTGGGC 628810 >seq16 Length=3637459 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1093809 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1093868 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1093869 CCCCACGTTGGGC 1093881 >seq614 Length=138510 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 |||||| || ||||| || |||||||||||||| |||||||| |||| || | Sbjct 19755 CTGCACGCTGATCCTTACTGAGGGAGACTCAGCCAAGACGCTGGCTGTGTCTGGGCTGGG 19696 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||||||| || || | || ||| | ||||||||||| || ||| |||||||||| || Sbjct 19695 AGTGGTGGGACGGGACCGCTACGGTGTGTTCCCCCTCCGGGGAAAGATGCTCAACGTCCG 19636 Query 217956 CGATGCCTC 217964 || || || Sbjct 19635 GGAGGCTTC 19627 >seq44 Length=2693125 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 2130290 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 2130232 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 2130231 TCGAGTCCCGGCAGAGA 2130215 >seq11 Length=4402495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 951913 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 951854 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 951853 TCCCGGCAGAGA 951842 >seq138 Length=1380131 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||| | |||||||||||||| Sbjct 72104 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATTTCAGGGTCGTGGGTTCGA 72045 Query 142562 GCCCCACATCGGGC 142575 |||||| | |||| Sbjct 72044 GCCCCATGTTGGGC 72031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027565093911512