Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq176 168 1e-36 seq9982 158 2e-33 seq54 156 8e-33 seq233 93.3 8e-14 >seq176 Length=1137095 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | ||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 797729 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 797670 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | ||| || || || || || || || || ||||| || || Sbjct 797669 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 797610 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| || || |||||||||||||| ||| ||| ||||| || | || || Sbjct 797609 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || |||||||| || ||||| |||||||| Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 >seq9982 Length=962 Score = 158 bits (174), Expect = 2e-33 Identities = 161/206 (78%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || || ||||| |||||||| || ||||| || || | |||||||| | ||| Sbjct 924 GTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 865 Query 68318 CTTC-CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 ||| ||||| || || || || || ||||| || || ||||| ||||| || || || | Sbjct 864 CTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTT 805 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCC 68435 | |||||||| ||| |||||||| |||| ||| || |||| |||||||||||| || Sbjct 804 TAGCCTTGACATTCTCAATGGTGTC-GCTGGGTTCCACCTCCAGGGTGATGGTTTTACCA 746 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || |||||||| Sbjct 745 GTGAGGGTCTTGACAAAGATCTGCAT 720 >seq54 Length=2421293 Score = 156 bits (172), Expect = 8e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||| ||||| |||||||| || ||||| || || | |||||||| | ||| Sbjct 1259653 GTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 1259594 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || || || || || || || ||||| || || ||||| || || || || || || Sbjct 1259593 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTT 1259534 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||||||| |||| ||| || |||| |||||||||||| || | Sbjct 1259533 GGCCTTGACGTTCTCAATGGTGTC-GCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGG 1259475 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||| || || ||||| Sbjct 1259474 TGAGGGTCTTGACAAAGATTTGCAT 1259450 Score = 152 bits (168), Expect = 9e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 || ||| || |||||||| || ||||| || || ||||| || || | |||||||| | Sbjct 1257647 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 1257588 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| ||||| || || || || || ||||| || || ||||| ||||| || || || Sbjct 1257587 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 1257528 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 ||| ||||| ||| ||| ||||| || | ||| || |||| |||||||||||| || Sbjct 1257527 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCC 1257468 Query 68435 CGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || |||||||| Sbjct 1257467 GGTGAGGGTTTTCACAAAGATCTGCAT 1257441 >seq233 Length=880882 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 596193 CATGACGCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 596134 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 596133 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 596098 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 603134 CATGACGCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 603193 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 | |||||| |||||||||||| || |||||||| Sbjct 603194 CAAAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 603229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921384713583040