Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq54 82.4 5e-11 >seq54 Length=2421293 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21827 GTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA 21886 |||||| ||||| || ||| | ||||| | || ||||||||||| ||| |||| ||| Sbjct 1257434 GTGCAAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGA 1257493 Query 21887 AGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGT 21946 | || || || | | | ||||| || || ||||| ||||| | || Sbjct 1257494 ACCCAGTGATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCC 1257553 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 |||| ||||| || |||||||| || || || || |||||| || || |||| Sbjct 1257554 TGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGA 1257613 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCA 22036 |||||||| |||||||| || || ||||| Sbjct 1257614 CTACAATATCCAGAAGGAGTCCACCCTTCA 1257643 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || ||||||||||| ||| |||| |||| || Sbjct 1259450 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 1259509 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||||| ||||||||||| | || |||| Sbjct 1259510 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 1259569 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||||||||| || |||||| || || |||| ||||| Sbjct 1259570 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1259629 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| ||||| || || || Sbjct 1259630 ATCCAGAAAGAATCCACCCTCCA 1259652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358034748623728