Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq176 107 2e-18 seq54 107 2e-18 seq9982 95.1 1e-14 >seq176 Length=1137095 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || ||||| ||| Sbjct 797698 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 797639 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||||||||||||||| || ||||||| || Sbjct 797638 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 797579 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || |||| ||| | || || || || || ||| Sbjct 797578 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 797519 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 797518 TTCACGAAAATCTGCAT 797502 >seq54 Length=2421293 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| ||| || || || |||||| || ||||| ||| Sbjct 1259646 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 1259587 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || ||||| ||||| || || || || Sbjct 1259586 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTG 1259527 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| ||| || |||| ||| | ||||||||||| || || Sbjct 1259526 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 1259467 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 1259466 TTGACAAAGATTTGCAT 1259450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || ||||| ||| || || || |||||| || || || || Sbjct 1257637 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 1257578 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || ||||| || || || ||||| || Sbjct 1257577 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 1257518 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| ||| || |||| ||| | ||||||||||| || ||| Sbjct 1257517 ACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 1257458 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1257457 TTCACAAAGATCTGCAT 1257441 >seq9982 Length=962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG-TTTACC 114244 ||||||||||| || |||||||| ||| || || || |||||| || || ||| || Sbjct 917 GTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTGCC 858 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || |||| || | ||| ||||| || || ||||| || || || || || || Sbjct 857 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTAGCCTT 798 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||||||| ||| ||| || |||| ||| | ||||| || || || || Sbjct 797 GACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGT 738 Query 114365 TTTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 737 CTTGACAAAGATCTGCATG 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420028756154784