Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq110 654 0.0 seq233 118 2e-21 seq784 111 3e-19 seq17 96.9 7e-15 >seq110 Length=1641499 Score = 654 bits (724), Expect = 0.0 Identities = 1118/1602 (70%), Gaps = 60/1602 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| |||| |||| | | ||| | |||||||||||||| ||||||| Sbjct 1622970 GATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCC---GCGCTCC 1622914 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| ||| || | ||| |||||||| |||||||| | ||| Sbjct 1622913 GTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGG 1622854 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || || ||||||| ||| |||||||||| ||||| || ||| Sbjct 1622853 GTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 1622794 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 ||| || |||||||||| || |||||| ||||||||||||||||| | ||| Sbjct 1622793 GACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTT 1622734 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||| | | | |||| || || |||||||| Sbjct 1622733 TCCTTCAGCAGCTTCCAGTCCCAAAGGTC-----GGTCGGCGTCTTCT----CCCACATG 1622683 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | |||||||||||||| ||||||||| ||| |||||| ||| | Sbjct 1622682 TCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-G 1622624 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | ||| ||| |||| ||||| | || |||||||||| ||||||||||||||||||| Sbjct 1622623 CTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTG 1622564 Query 244426 CTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCC-CATCATCATGAAGAC 244482 |||| | | || | ||| | | | | ||| ||| |||| ||||| |||||| | Sbjct 1622563 GATGTTGA-GCAGCTGAGCTT-CGGGACTTTCGAACGGG-TGCCGCATCAGGATGAAGGC 1622507 Query 244483 GTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC 244542 ||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| | || Sbjct 1622506 GTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGC 1622447 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 ||| || || ||||| ||||| |||||| | |||||||||||| ||| | Sbjct 1622446 TTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTT 1622387 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 | |||| ||||||| || |||||| | || || || ||| | | Sbjct 1622386 GGTGACGGAGGCCAGCTTCTTGAAGTCGAA-----AG------TCCGCTCTGGCG----T 1622342 Query 244663 CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 || || ||||||||||| | |||||||||||||||||||||||| ||| | |||| Sbjct 1622341 GACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGT 1622282 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| || | ||| ||||||||||| |||||||||||||||||||||| ||| || || Sbjct 1622281 GTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 1622222 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||| |||||| |||||||||||||||||| |||| |||||| ||| ||||| Sbjct 1622221 GCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGA 1622162 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 ||| || | || |||||| | | ||||| ||| ||| | | || || Sbjct 1622161 CTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACTCTCCCTTCCTT 1622102 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 ||| || |||||| || ||||||||| |||||| |||||| || || || || Sbjct 1622101 CTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACA 1622042 Query 244963 CGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 ||| ||| ||||| | ||| || | | || || |||| |||||| |||| Sbjct 1622041 -TTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGT 1621983 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | |||||||| | ||| | ||| ||||| |||| |||||||| ||| || ||||||| Sbjct 1621982 CAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCT 1621923 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 || ||||||||| || ||||| ||||||| |||||| ||||||| || | |||| || Sbjct 1621922 TCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGG 1621863 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATG 245197 | ||||| | ||||||||| |||||||| | | | |||||| |||| | | Sbjct 1621862 CCCCGGGTCTCTTGTTGCCGCCCTGGTCGA----CGTACCGAGCGGTGTTGTTGTAAACT 1621807 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | ||||| | ||||| |||| |||||||||||| ||||||| || | Sbjct 1621806 CTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTC 1621747 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 | || | ||| | | || ||| | ||||| ||| |||||| ||||| ||||| Sbjct 1621746 GATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCAC 1621687 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | |||||| ||||| || |||||||| ||||||| |||||| ||||| Sbjct 1621686 TGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAA 1621627 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| | | | | | |||||| || || || ||||||||| || Sbjct 1621626 CTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC 1621567 Query 245438 TAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCG-CCGTGGA 245495 | | || ||| |||| ||| |||| || ||||||||| | ||| ||||||| Sbjct 1621566 CA-CTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATG-TCTCGCCCGTGGA 1621509 Query 245496 TCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGT 245551 || | | ||||||||| ||||||| || ||| | || | || || Sbjct 1621508 TCCCAACCGACACCCTCATGAGCATGTGCTGCGG----TCGCTCGGCCACTTTCCCGTTG 1621453 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| |||||| ||||| || |||||||| || ||| Sbjct 1621452 ATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAG 1621411 >seq233 Length=880882 Score = 118 bits (130), Expect = 2e-21 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| |||| || ||||| ||||||||||| || | |||||| Sbjct 604118 GGAGAGAGAGTGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 604059 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||||||||||| ||| ||| ||| | ||||||||| || |||||| ||||| || Sbjct 604058 TCCATCTTCTGGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCAGCAACGAGCT 604000 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||| | ||||||| Sbjct 603999 CATCAGCCGAGACGAGG 603983 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| Sbjct 603224 CCCGTTCGACTTCATGGAGAACATTTCTTTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 603165 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 603164 GGTCGGGGAGTACCAG 603149 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| | | ||||||||| ||||| | || ||||||||||||||||| ||||| Sbjct 604487 TTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATG 604428 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||||||| ||||| | ||| || |||| |||||| ||||||| | Sbjct 604427 GAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGATCCCAGC 604368 Query 42597 GAG 42599 ||| Sbjct 604367 GAG 604365 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| ||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 604282 CTGTTCAACGCCATCCAGACGCTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTCAAC 604223 Query 42669 TGGATCG 42675 ||||||| Sbjct 604222 TGGATCG 604216 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 596103 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 596162 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 596163 GGTCGGGGAGTACCAG 596178 >seq784 Length=80426 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||| | |||||||| |||||||| || ||| |||||||||||||||| | || || Sbjct 23888 GTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGG 23947 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 |||| ||| ||||||||||||||||||||||||| | ||| || ||||| ||| Sbjct 23948 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGC 24007 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 | ||| || | || |||||| | | |||||| ||| Sbjct 24008 GACTCGATGATGGCGTACCAGAGCTGCTGAGCCTTCACC 24046 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||| |||||||| || ||||| | ||| ||| ||||| |||| |||||||| || Sbjct 24349 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 24408 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||||||||||||| ||||| || || | ||||| ||||||| Sbjct 24409 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACATCAGCATGCCACGGCTCCAG 24468 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||| |||| || ||| || || Sbjct 24469 GTACACAGAGAAGGCCCCTGG 24489 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| |||||| || | ||| ||| Sbjct 22257 ACCTGAAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTATGCCTCAATG 22316 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| |||| ||||| || ||| || || ||||| || | || |||| | Sbjct 22317 GACTCATTGTTACCCAAGATCTGGGCAGTGGAAGCTGTGGGCATTGGGGCCAAAAGCAAA 22376 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 22377 CTGTTCCTCACACCGTGCCT 22396 >seq17 Length=3631609 Score = 96.9 bits (106), Expect = 7e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | || || ||||| || |||||||| ||| | ||||| Sbjct 3276911 GGGGAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCT 3276970 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | |||| |||||| ||| ||| ||| || ||||| || || |||| ||| |||||||| Sbjct 3276971 GCTATCTACTGGCTGAAGAAGAGAGGCCTC-ATGCCAGGCCTTACCTACTCCAACGAACT 3277029 Query 42815 CATCAGCAGGGACGAGG 42831 ||| |||||||| |||| Sbjct 3277030 CATTAGCAGGGATGAGG 3277046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944095654920320