Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq19287 116 8e-22 >seq19287 Length=504 Score = 116 bits (128), Expect = 8e-22 Identities = 237/348 (68%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 1287 GCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGAT 1346 ||| | |||||||||||||||||| || ||| || || ||||||| |||| || | Sbjct 46 GCCATGCCAGCCGATCATGATGCGGTCCAGCCCCTGACGGGTGAGGATGGCGTCACGAAC 105 Query 1347 GCGCTGTTGGAAGTCGGCGAACTTCGCCCATGCGTCGAGCTTGCGATACGGAATCGCCGT 1406 || |||||||||| |||||| ||||| ||||||| || || || | ||| || Sbjct 106 ACGGGTCTGGAAGTCGGGGAACTTGGCCCAGGCGTCGATCTGGCCGTAGGTGATCTGGGT 165 Query 1407 GTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCGAGCGCCGT-CGGGTCGATCG 1465 |||| ||| ||||| |||| ||||| | | || ||| |||| ||||| | | | Sbjct 166 GTCGAAGTTGGTCTGGGCGCATTCGTAGCTCTGGTCGTAGAG-ACCGTGCGGGTTGTTGG 224 Query 1466 GTTGGCGCGCGGCCTTCGT---CGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACA 1522 | ||||| | | || || |||| |||||| | ||||| | || || | | | Sbjct 225 GCTGGCG---GTCTTTGGTGTCGGTGTTGGTGCGACCGGCGATGGTGCTGGTGATGCCGA 281 Query 1523 GGCCGAGCTTTTCGCCTTCGAGCTCGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACT 1582 |||| ||||| ||||| | || || || | |||||||| | ||| || Sbjct 282 TACCGACCTTTTGGCCTTTCATTTCATCGACAGGGATGACGTTGATCATCCCGAGGAAGG 341 Query 1583 CGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTGCACGGTCGGCT 1630 || ||| ||||||||||| ||||| || ||| || |||||||||| Sbjct 342 CGACCGACTCCTGCATCTTGGTTTCCAGGGTCTGCTGGACGGTCGGCT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114221608276752