Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq19287 113 1e-20 >seq19287 Length=504 Score = 113 bits (124), Expect = 1e-20 Identities = 236/348 (68%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 1342 GCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGAT 1401 ||| | |||||||||||||||||| || ||| || || ||||||| |||| || | Sbjct 46 GCCATGCCAGCCGATCATGATGCGGTCCAGCCCCTGACGGGTGAGGATGGCGTCACGAAC 105 Query 1402 GCGCTGCTGGAAGTCGGCGAACTTCGCCCACATGTCGAGCTTGCGATACGGAATCGCCGT 1461 || ||||||||||| |||||| ||||| ||||| || || || | ||| || Sbjct 106 ACGGGTCTGGAAGTCGGGGAACTTGGCCCAGGCGTCGATCTGGCCGTAGGTGATCTGGGT 165 Query 1462 GTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCGAGCGCCGT-CGGGTCGATCG 1520 |||| ||| ||||| |||| ||||| | | || ||| |||| ||||| | | | Sbjct 166 GTCGAAGTTGGTCTGGGCGCATTCGTAGCTCTGGTCGTAGAG-ACCGTGCGGGTTGTTGG 224 Query 1521 GTTGGCGCGCGGCCTTCGT---CGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACA 1577 | ||||| | | || || |||| |||||| | ||||| | || || | | | Sbjct 225 GCTGGCG---GTCTTTGGTGTCGGTGTTGGTGCGACCGGCGATGGTGCTGGTGATGCCGA 281 Query 1578 GGCCGAGCTTTTCGCCTTCGAGCTCGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACT 1637 |||| ||||| ||||| | || || || | |||||||| | ||| || Sbjct 282 TACCGACCTTTTGGCCTTTCATTTCATCGACAGGGATGACGTTGATCATCCCGAGGAAGG 341 Query 1638 CGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTGCACGGTCGGCT 1685 || ||| ||||||||||| ||||| || ||| || |||||||||| Sbjct 342 CGACCGACTCCTGCATCTTGGTTTCCAGGGTCTGCTGGACGGTCGGCT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117257664245568