Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq28 105 6e-18 >seq28 Length=3093535 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || |||| || |||| ||| || || | || | ||||||||| ||||| ||||| Sbjct 1719918 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 1719977 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| ||||||||| | || | ||| |||||||||||||| ||||| ||||| Sbjct 1719978 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 1720037 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || || || ||||| | ||| ||||| || |||||||| Sbjct 1720038 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 1720078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 20521 GTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580 |||| |||| | || || ||||||||||| |||||||| || |||||||||| ||||| Sbjct 1720808 GTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTCCCC 1720867 Query 20581 CTC--CCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCC 20638 ||| || ||| || | | ||| | | ||| ||| || | ||| || || |||| Sbjct 1720868 CTCCTCCCTCTCTGTG--AAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTCC 1720925 Query 20639 CATATCTTGACTCCTGTTCT-TGAAAGCTCCCTGG 20672 || ||||| |||||| |||| ||| |||||| ||| Sbjct 1720926 CAGATCTTCACTCCT-TTCTCTGACAGCTCCTTGG 1720959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441258969954880