Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq19287 141 2e-29 >seq19287 Length=504 Score = 141 bits (156), Expect = 2e-29 Identities = 248/358 (69%), Gaps = 20/358 (6%) Strand=Plus/Minus Query 6903 AGTTCAGCGTCGCGCCGAGCGTCCAGCAGAAGCTGGAGACCAAGGTTCAGGAGTCGAGCG 6962 |||||| ||| ||||| ||||||||||| ||||| |||||| | ||||||||| || Sbjct 401 AGTTCAACGTGCAGCCGACCGTCCAGCAGACCCTGGAAACCAAGATGCAGGAGTCGGTCG 342 Query 6963 ACTTCCTGAAAAGCATCAACTTCTACGGCGTGCCCGAACAGGAAGGCGAAAAGATCGGCC 7022 |||||| | |||||| || | || ||| | ||||| ||||| |||| Sbjct 341 CCTTCCTCGGGATGATCAACGTCATCCCTGTCGATGAAATGAAAGGCCAAAAGGTCGGTA 282 Query 7023 TGGGCGTGTCCGGC-------CCGGTGGCAAGCACCACCGACACCACCCAGCAGGACCGG 7075 | ||| | || || ||||| ||| || ||||||||||| | ||||| Sbjct 281 TCGGCATCACCAGCACCATCGCCGGTCGCAC-CAACACCGACACCA------AAGACCGC 229 Query 7076 GAGACCTCCGACATTTCG-ACGATGG--ACGGTCGCCGTTATCGTTGCGAGCAGACCAAC 7132 || || | || || ||| | ||| | | || |||| ||||||||| Sbjct 228 CAGCCCAACAACC---CGCACGGTCTCTACGACCAGAGCTACGAATGCGCCCAGACCAAC 172 Query 7133 TCGGACACGCACATCACCTACCAGAAGCTGGACGCTTGGGCGAAGTTCGCCGACTTCCAG 7192 | ||||| || ||||||||| || | ||||| ||||| |||||| ||||||||||| Sbjct 171 TTCGACACCCAGATCACCTACGGCCAGATCGACGCCTGGGCCAAGTTCCCCGACTTCCAG 112 Query 7193 ACTCGCATCCGCGACGCCATCATCAAGCGCCAGGCGCTGGACCGCATCATGATCGGCT 7250 || || | || ||||||||| ||| || |||| ||||||||||||||||||||||| Sbjct 111 ACCCGTGTTCGTGACGCCATCCTCACCCGTCAGGGGCTGGACCGCATCATGATCGGCT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123880041332448