Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq54 136 9e-27 seq9982 123 6e-23 seq176 123 6e-23 >seq54 Length=2421293 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| | || | || || || || | ||| |||||| ||||| || |||||| Sbjct 1259679 TGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1259620 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || ||||| | ||||| || || |||||||| | ||| || | Sbjct 1259619 GACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 1259560 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||||||||| || || ||||| || || | ||||| | ||| Sbjct 1259559 GGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCC 1259500 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || ||||| || |||||||| || || ||||| Sbjct 1259499 ACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| || ||||| || ||||| | || ||||| || ||| Sbjct 1257631 TCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 1257572 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || || ||||||||||| || || || ||||| Sbjct 1257571 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTC 1257512 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | ||| || || || ||||| || || ||||| || || || || Sbjct 1257511 TCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACA 1257452 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1257451 AAGATCTGCAT 1257441 >seq9982 Length=962 Score = 123 bits (136), Expect = 6e-23 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || || || | || |||||| ||||| || ||||||| Sbjct 947 CCACCCCTGAGACGAAGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 888 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTT-CCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || ||||| | || ||| || || |||||||| | ||| || | || Sbjct 887 AGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 828 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || |||||||||||||| || || || || || || | ||||| | ||| || Sbjct 827 GATGCCCTCCTTATCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCAC 768 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || |||||||| || |||||||| Sbjct 767 CTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 720 >seq176 Length=1137095 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || ||||| | ||||| || || ||| Sbjct 797692 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 797633 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | || || |||||||||||||| || || || |||||||| Sbjct 797632 ATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 797573 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| |||||||| || || || || ||| Sbjct 797572 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACG 797513 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 797512 AAAATCTGCAT 797502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179342561308496