Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq110 165 1e-35 seq784 95.1 1e-14 seq233 84.2 3e-11 >seq110 Length=1641499 Score = 165 bits (182), Expect = 1e-35 Identities = 896/1404 (64%), Gaps = 54/1404 (4%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||||||||| Sbjct 1622850 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 1622791 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | || | || || || |||| Sbjct 1622790 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCC 1622731 Query 114062 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 114118 || || | |||||| | || | | |||| || |||||| || ||||| Sbjct 1622730 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCT---TCTCCCACATGTCGTACTGG 1622674 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 ||||| || | | | | ||||| ||||| | |||||||| ||||| | | || Sbjct 1622673 AGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 1622614 Query 114179 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 1622613 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC 1622554 Query 114239 GCCTTGGCCTCGTCGGA--ATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 114296 || || ||| ||| || |||| | | || || || || | || || |||| Sbjct 1622553 AGCTGAGCTTCG--GGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGAC 1622496 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG-ACTTTCGAGCGGTCTC---C 114352 | ||||| |||| || || || | || | | | || | | | || || | || Sbjct 1622495 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTC---CGCT-TCAGGA 1622440 Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 || || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 1622439 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 1622380 Query 114413 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 114472 ||||| | | | || ||| | || |||| |||| ||| | |||||| Sbjct 1622379 GAGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCG 1622323 Query 114473 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 114532 || || ||||| || || || | ||| ||||| |||||||| | | ||||| Sbjct 1622322 ATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTG 1622263 Query 114533 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || | || | ||| |||||||||| ||||| || || ||| ||| || || Sbjct 1622262 CAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCG 1622203 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||||| || ||||| || || || ||||||| || || || | |||| Sbjct 1622202 TCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 1622143 Query 114653 A-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 114711 | | | ||| || ||| || ||| ||| |||| ||| || || |||||||| Sbjct 1622142 AGCTGCTGCGCCT-TCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAG 1622084 Query 114712 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGA 114770 || ||||| || ||| | ||| ||||| || | || ||||| || | | Sbjct 1622083 CTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGG-ACATTCGCTGGGACACATCA 1622025 Query 114771 GAGACCATTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||||| | || | ||| || | ||||||||| ||||| |||||||| | || Sbjct 1622024 AGGACCA--GTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGC 1621967 Query 114829 TGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 |||| || || | | | ||| || | | || || || || ||||| | Sbjct 1621966 GTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGA 1621908 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGA 114943 | || | | || |||||| || ||||| |||| |||| | ||| || | Sbjct 1621907 ACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGT 1621848 Query 114944 CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATA 115003 | || |||||| || |||| || ||| || | || | ||||| || | | Sbjct 1621847 TG-CCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAAC 1621789 Query 115004 CCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGA--CA--TCA 115057 || | || | ||| || || || || | ||| || | || || || ||| Sbjct 1621788 CCGTTGGAGTTGCCGTTGGTGCCTGCGAT--GTAGCTTCCTGTCGATCGGATGCAGCTCA 1621731 Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117 | || || || || || || |||| || || ||||||||| | | || || Sbjct 1621730 CCG----CCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTG 1621675 Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGT 115177 ||||||| || ||||| ||| |||| | |||| |||||||| || |||| || Sbjct 1621674 TCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGC 1621615 Query 115178 GGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGG 115234 |||| ||| || || |||||||||||||| || | |||||| ||||| || | | Sbjct 1621614 GGCCGGTTG--GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCC 1621558 Query 115235 GACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 115294 |||| | ||||||||| | | ||||| |||||| |||||| || || | ||| Sbjct 1621557 GACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGAC 1621498 Query 115295 ACCCGCATAAACATGTATTGGGGT 115318 |||| ||| | ||||| || ||| Sbjct 1621497 ACCCTCATGAGCATGTGCTGCGGT 1621474 >seq784 Length=80426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||||| ||||| | ||||||||||||||||||| ||||| ||||| Sbjct 22290 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGAA 22349 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| || | ||||| Sbjct 22350 GCTGTGGGCATTGGGGCCAAAAGCAAACTGTT 22381 >seq233 Length=880882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| ||| |||||| || || |||| ||| || ||||| || || | ||||| Sbjct 603983 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 604042 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || | || ||||| ||||||||||||||||||||| ||||| | Sbjct 604043 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 604102 Query 126186 C 126186 | Sbjct 604103 C 604103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597199542506560