Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq110 268 9e-67 >seq110 Length=1641499 Score = 268 bits (296), Expect = 9e-67 Identities = 1035/1608 (64%), Gaps = 51/1608 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||||||| || ||||| || ||||| | || | Sbjct 1621403 TACAACTTCTTCGGCTTCAAGACTCTGGAGCGTTCCTACCTGCTGAAGATCAACGGGAAA 1621462 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||||| || |||| ||| | || | | ||||| ||||| | ||| Sbjct 1621463 GTGGCCGAGCGACCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGAC 1621522 Query 93838 AT----GCCGAATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892 || |||| || || | | | || | || ||| ||| ||| ||| | Sbjct 1621523 ATCGACGCCGCC-GT----CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACG 1621577 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTTCCT 93950 || | |||||||| |||||||| |||||| |||| || ||| |||| || ||||| Sbjct 1621578 CCTCTCCGACCCTCTTCAACGCCGGGACCAACCGG--CCGCAGCTGTCCAGTTGCTTCCT 1621635 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | | | | |||| |||| |||| || || | ||||| ||| ||| | || ||| Sbjct 1621636 GCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCT 1621695 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 ||| || || | ||| || || ||||| | || | | | || | | || Sbjct 1621696 CATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACAGGAAG 1621755 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||||| || ||||| |||| ||||||||| | || || ||||| | || | ||| Sbjct 1621756 CTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAA 1621815 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| | || || ||||| |||||||| || | ||| || | ||||| | || Sbjct 1621816 CAACACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTA 1621875 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 ||| ||||| |||||| |||||| | ||| | || ||| |||||| || || Sbjct 1621876 TCTGGAGCCATGGCACTTCGACGTGTTTGAGTTCCTGGAGCTGAAGAAGAACACAGGAAA 1621935 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | |||| ||||||||||| |||||||| | ||| | || ||||| || ||||| Sbjct 1621936 GGAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAA 1621995 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTT--TTTGTCCCAATGAATGTCCCGGACTG 94368 | || |||| ||| | |||| || || | ||||||| |||||||| || ||| Sbjct 1621996 GAGAGTGGAGAGCAACCAGGACTGG--TCCTTGATGTGTCCCAGCGAATGTCCTGGGCTG 1622053 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 ||| || ||| | || || | | || | || || | | || | Sbjct 1622054 GACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGA 1622113 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | || ||| || | || | |||| ||| | ||| | || ||| || Sbjct 1622114 GTGAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAA 1622173 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || || |||||||| | | ||||||| || |||| ||| |||||||||| || Sbjct 1622174 ACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAAC 1622233 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||||| || || || ||||| ||| | || ||||| || |||| Sbjct 1622234 CTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGAC 1622293 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | || || || ||||||| ||||||| ||| | || | || || | ||| Sbjct 1622294 GAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCT--CAACAT--GTACGTCACGCCAGA 1622349 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCT 94726 || ||| ||||| | || |||| | | || | |||| || || Sbjct 1622350 GCGG--ACT------TTCGACTTCAAGAAGCTGGCCTCCGTCACC--AAGGTAATCGTGA 1622399 Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||||| |||| | | ||||||| |||| |||||| || || || ||||||| || | Sbjct 1622400 AAAACCTCAACAAGATCATCGACATCAACTACTACCCGGTTCCTGAAGCGGAGACTTCCA 1622459 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || | || |||| ||||| ||||||||||||||| | || ||||| | | ||| Sbjct 1622460 ACAAGCGCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGA 1622519 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 |||| | || | ||| | ||| || | | || | | || ||||| | || Sbjct 1622520 TGCGGCACCCGTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCA 1622579 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCG-----GACGGCGGGCC 94961 | || ||| ||| || | | ||| || | || ||| || ||| || Sbjct 1622580 TCTACCACGCCGCCCTGGA-------GGCCAGCTG-CGAGCTCGCCGCAGAGCTCGGCCC 1622631 Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| ||| | || |||||| | ||||||| | |||| |||| | |||| Sbjct 1622632 CTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGA 1622691 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CTACGCGCTGATGTTATCAAACACG 95080 || ||| | | || | |||||| ||||| || | | | | |||||||| Sbjct 1622692 GAAGACGCCGACCGACCTTTGGGACTGG-AAGCTGCTGAAGGAAAAGATCAGCAAACACG 1622750 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 | |||| ||| ||||| |||| |||||||||||||| ||||| || |||||||| | Sbjct 1622751 GCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGG 1622810 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 ||||||||||||| |||| | | |||| |||| | |||| | | ||||||| ||| Sbjct 1622811 GCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCG 1622870 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || |||| || ||||| |||||||| ||| |||||| | || ||||| Sbjct 1622871 GAGAGTTCCAGATCGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGA 1622930 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGC-GCCAACGGCTCCGTCCAG 95307 || || | |||||| | ||| | ||| |||||| ||| ||||| Sbjct 1622931 ACGAGGAGATGAAGAACAAGCTGAT-CGCAAACAACGGATCCATCCAG 1622977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494595610886720