Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq110 233 2e-56 seq176 93.3 4e-14 seq784 82.4 8e-11 >seq110 Length=1641499 Score = 233 bits (258), Expect = 2e-56 Identities = 944/1462 (65%), Gaps = 40/1462 (3%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 1622844 TTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTG 1622785 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| ||||| || || |||| || |||||| | || | ||||||| | Sbjct 1622784 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGC 1622725 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||||| || | | ||| ||| | ||||||||||||||| | | || Sbjct 1622724 AGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 1622665 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| |||| ||| | |||| |||| |||| || || ||| || ||||| Sbjct 1622664 TTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGCTCGCA 1622606 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | | ||| ||||| ||| ||| || | ||||| | || Sbjct 1622605 GCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGC 1622546 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 ||| || ||| |||| |||| ||| | |||||||||||||||||||||| || Sbjct 1622545 TTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCC 1622486 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCT--CGCTATGGGATAGTGA 153491 || ||||| || | || || |||| | ||| |||| | | || |||| Sbjct 1622485 GATCCCGATCGGCCTGTGGCGCTTGTTG-GAAGTCTC-CGCTTCAGGAACCGGGTAGTAG 1622428 Query 153492 TTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTC 153551 ||| ||||| || ||||||||||| ||| | || || || | | || ||| Sbjct 1622427 TTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTC 1622368 Query 153552 TCGAAATCATAGGTCATTTC-GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAG 153610 | ||| || | ||| || | || |||| ||| || | ||| || || ||||| Sbjct 1622367 TTGAAGTCGAAAGTCCGCTCTGGCGTGACGTA--CAT--GTTGAGGGCGATGGAGGCCAG 1622312 Query 153611 ATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCT 153670 || ||||||||| ||| || | | |||||| ||| | ||| | |||||||||||| Sbjct 1622311 GTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCT 1622252 Query 153671 GCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAG 153730 ||| || ||| ||||| || ||||| ||||| || || ||||| ||||| ||| |||| Sbjct 1622251 GCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAG 1622192 Query 153731 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCG 153789 |||||| || ||||| ||| || | |||| ||| | || || | ||||| Sbjct 1622191 CATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCG 1622133 Query 153790 C--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAA 153846 | || ||||| || | | || || |||| ||| ||| || ||| | Sbjct 1622132 CCTTCACCACCCTCTTC---ACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGA 1622076 Query 153847 ACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAGCGACCAC 153905 |||| || || |||| ||| | || || ||||| | | || |||||||||| ||||| Sbjct 1622075 ACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTG-GGACACATCAAGGACCAG 1622017 Query 153906 ATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGG 153965 | || | | || | ||||||||| || || | ||| | ||||| | ||| Sbjct 1622016 TCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGG 1621957 Query 153966 TCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGA 154023 || | || | ||| |||||| || |||| ||||| | || | | | | Sbjct 1621956 TCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAACTCAAACA 1621899 Query 154024 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCGCCCT 154080 |||| |||||| || || | || | ||| | ||| || | | || ||||||| Sbjct 1621898 CGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCT 1621839 Query 154081 GATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGG 154140 | ||||||| || | | |||||| | || | || ||| || ||| ||| | | | Sbjct 1621838 GGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGT 1621779 Query 154141 TGCCGTTGGT-----CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAAC 154195 |||||||||| || || | ||| ||| || | ||| | ||| || Sbjct 1621778 TGCCGTTGGTGCCTGCG-ATGTAGCTTCCTGTCGATCGGATGCAGCT----CACCGCCAC 1621724 Query 154196 GCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCC 154255 ||| || ||||| || |||| || ||| ||||| | ||| || ||||||||| Sbjct 1621723 GCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCC 1621664 Query 154256 GTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGT 154315 |||||||| ||||| | | |||||| ||| || ||| ||||| | || Sbjct 1621663 TTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGT 1621604 Query 154316 TCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTA 154375 || || |||||||| ||| ||||| || ||| || | || | | ||| Sbjct 1621603 CCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTA 1621544 Query 154376 CGTTTCGATGGCGTCTTCGATATCATCG-CCGTGAATGCCGAGCGCGACGCGCATGAGCA 154434 || |||| |||| | ||||| || ||| ||||| || || | || || | |||||||| Sbjct 1621543 GGTCTCGACGGCGGCGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCA 1621485 Query 154435 TGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGG 154494 |||||||||| || ||||| ||| | || ||||||| || || | || || | Sbjct 1621484 TGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAG 1621425 Query 154495 TTTTGTAACCGAAATACTTGTA 154516 | ||| | ||||| | ||||| Sbjct 1621424 TCTTGAAGCCGAAGAAGTTGTA 1621403 >seq176 Length=1137095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || || ||||| || | | Sbjct 797695 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 797636 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || |||||||| || ||| | |||| || | Sbjct 797635 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-TGAATCTTTGCCTTCAC 797577 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | | ||||||||| | || | || || ||||| || ||||| Sbjct 797576 GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTT 797517 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 797516 CACGAAAATCTGCAT 797502 >seq784 Length=80426 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||| | || ||||| | |||||| |||||| | || ||| ||||| ||||||||| | Sbjct 23889 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 23948 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || | || | ||||| ||||| ||| ||||||||||||| Sbjct 23949 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 23988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496134413927040