Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq110 203 3e-47 seq784 98.7 9e-16 seq54 98.7 9e-16 seq9982 95.1 1e-14 seq176 86.0 6e-12 >seq110 Length=1641499 Score = 203 bits (224), Expect = 3e-47 Identities = 516/770 (67%), Gaps = 24/770 (3%) Strand=Plus/Minus Query 146048 CCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACA 146107 |||||| ||| | ||||||| | ||| ||||| |||| || || | | || | Sbjct 1622906 CCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGA 1622847 Query 146108 CGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGG 146167 |||||||||| ||| ||||| ||||||||||| || || ||||| || || | || | Sbjct 1622846 TGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCG 1622787 Query 146168 TAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC--- 146224 | |||||| ||||| ||||| ||| |||||||||||| | ||||||||| Sbjct 1622786 TGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCA 1622727 Query 146225 GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCA 146284 | || || | | ||| |||| | || || || | | | ||||||| || | Sbjct 1622726 GCAGCTT----CCAGTCC-CAAAGG-TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGA 1622673 Query 146285 TAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-G 146340 |||| || || | | || |||||||| || || || ||| | ||| | Sbjct 1622672 GGATGCCCTTGCTGACGGGCGAGCC---CTCGTACGTCTCGTAGGGGCCGA-GCTCTGCG 1622617 Query 146341 GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTG 146400 || || |||||||| || ||||| || | ||| |||||||| |||| | |||| Sbjct 1622616 GCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTG 1622557 Query 146401 ACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGA 146458 | || ||| || | | || ||| | ||| | || | || | ||||||||||| | Sbjct 1622556 A-GCAGCTGAGCTTCGGGACTTTCGAACGGG-TGCCGCATCAGGATGAAGGCGTCGGCCA 1622499 Query 146459 GACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAG 146518 ||||||| | |||| || | || | ||| |||||| || | || | | | Sbjct 1622498 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAA 1622439 Query 146519 TGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAAC 146578 || |||| |||| ||||||||||||||||||| || ||||| | || || | Sbjct 1622438 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 1622379 Query 146579 GATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGA 146638 |||| |||| || || | | | ||| |||| || |||||| ||||| Sbjct 1622378 AGGCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGA 1622322 Query 146639 TAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGC 146698 | ||||||| ||| || ||||| |||||||||| | |||| ||| | ||| | || Sbjct 1622321 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 1622262 Query 146699 AGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGT 146758 |||||||||||||||||||| |||||| || | ||||| || | |||||| | || Sbjct 1622261 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 1622202 Query 146759 CCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 |||||||||||||||| || |||||||||| | || ||||| |||| Sbjct 1622201 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATG 1622152 >seq784 Length=80426 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 |||||||| | |||||| |||||| |||||||| |||||| ||||| ||||| | | Sbjct 23897 ACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 23956 Query 146746 TTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||||| ||||||||||||||||||||| Sbjct 23957 CTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 23988 >seq54 Length=2421293 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| ||| || ||||| ||| || ||||| ||||| Sbjct 1257637 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 1257578 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || ||| Sbjct 1257577 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 1257518 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | || || || | ||| | ||||||||||| || ||| Sbjct 1257517 ACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 1257458 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1257457 TTCACAAAGATCTGCAT 1257441 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| ||| || ||||| ||| || |||||||| ||| Sbjct 1259646 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 1259587 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || |||||||| || ||| |||||| |||| Sbjct 1259586 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTG 1259527 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || | ||| | ||||||||||| || || Sbjct 1259526 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 1259467 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 1259466 TTGACAAAGATTTGCAT 1259450 >seq9982 Length=962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTT-CC 126975 ||||| ||||| || || ||||| ||| || ||||| ||| || ||||| ||| || Sbjct 917 GTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTGCC 858 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || |||||| | |||||| || || || ||||||||||| ||| |||||| ||| Sbjct 857 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTAGCCTT 798 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | |||||| | || || || | ||| | ||||| || || || || Sbjct 797 GACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGT 738 Query 127096 TTTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 737 CTTGACAAAGATCTGCATG 719 >seq176 Length=1137095 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || ||||| || || || ||||| ||| || ||||| ||| || Sbjct 797711 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 797652 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| ||||| |||||| | |||||| || ||||| ||||| || || ||| | Sbjct 797651 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-T 797593 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | ||| || | | || | ||| || | ||| || || | ||| | || | Sbjct 797592 GAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCT 797533 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || ||||| || ||||||||||| Sbjct 797532 TCCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475378168343680