Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq110 167 2e-36 seq784 95.1 1e-14 seq54 84.2 2e-11 >seq110 Length=1641499 Score = 167 bits (184), Expect = 2e-36 Identities = 882/1396 (63%), Gaps = 28/1396 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | ||||| || Sbjct 1621460 AAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA 1621519 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| ||| || ||| | | |||| | || | ||||| ||||| Sbjct 1621520 GACATCGACGCCGCCGTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 1621579 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| |||||| || || ||| ||| |||| || || ||||| Sbjct 1621580 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTC 1621639 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || || | |||||| | ||| Sbjct 1621640 GCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATT 1621699 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | | ||||| || |||||| ||| | | | || |||||| | Sbjct 1621700 TCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACAGGAAGCTAC 1621759 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 ||| | ||||| |||| | | || |||| | | | |||||| |||||||||| ||| Sbjct 1621760 ATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAAC 1621819 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTATCTA 123314 ||| ||| ||||||||||||||||||| | | | || || | || || ||||| Sbjct 1621820 ACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTATCTG 1621879 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAA 123374 || || |||||| | || |||| || || | | | || |||| || ||| Sbjct 1621880 GAGCCATGGCACTTCGACGTGTTTGAGTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAG 1621939 Query 123375 GAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGC 123434 || ||| |||| | || | || ||||| || ||| | || || |||| ||| | Sbjct 1621940 GAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAGA 1621999 Query 123435 GTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCGA 123493 || | | || | ||||| | ||||||||| | || ||||| || || ||| Sbjct 1622000 GTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAATGTCCTGGGCTGGACGA 1622058 Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----AA 123548 | || | |||| || || | ||| | |||| ||| ||||| | || Sbjct 1622059 GTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGTGAA 1622118 Query 123549 CAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAA 123608 ||| | || | | | ||| | | || | | || ||||| | || |||| Sbjct 1622119 GAGGGTGGTGAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCGAA 1622173 Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668 ||||| || || |||||||||||||| ||||| |||||| |||| | ||| ||| ||| Sbjct 1622174 ACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAAC 1622233 Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA---CAGCGATGCC 123725 |||| || || || || || || || ||| | || | | || || |||| | | | Sbjct 1622234 CTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGAC 1622293 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT----CGAAAA 123781 | | |||||||| || || |||| || || | | || | ||| | | | Sbjct 1622294 G---AGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG 1622350 Query 123782 CGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAA 123841 ||| |||| | ||| | | ||| | | || || | || || || | || Sbjct 1622351 CGG-ACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAA 1622409 Query 123842 CAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACA 123901 ||| || ||||| | || | || || | |||||| || || | || Sbjct 1622410 CAAGATCATCGACATCAACTACTACCCGGTTCCTGAAGCGGAGACTTCCAACAAGCGCCA 1622469 Query 123902 CAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCC 123961 ||| ||| |||| | ||| | || || |||||||||| || | || |||| || Sbjct 1622470 CAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACCC 1622529 Query 123962 GTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGG 124021 || |||||| |||||| || |||| || | || || ||| || || || ||| Sbjct 1622530 GTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGC 1622589 Query 124022 CGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGG 124081 ||| ||||||| |||||||| || || | | |||| | ||||| | |||| ||| Sbjct 1622590 CGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGG 1622649 Query 124082 C-AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATT 124140 | ||||| | ||| || || | ||||||||||||||| | || ||||| | Sbjct 1622650 CTCGCCCGTC-AGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGACC 1622708 Query 124141 TGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGT 124200 | |||||||||| | | || || || | ||||| || | ||| ||| Sbjct 1622709 TTTGGGACTGGAAGCTGCTGAAGGAAAAGATCAGCAAACACGGCGTGAGGAACAGCCTGC 1622768 Query 124201 TGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCG 124260 || ||||| |||||| ||||| |||| || || || | || |||||||| ||| ||| Sbjct 1622769 TGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCG 1622828 Query 124261 AGCCGTTCACTAACAA 124276 || ||| ||| | ||| Sbjct 1622829 AGGCGTACACCAGCAA 1622844 >seq784 Length=80426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 24000 GAGACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 23941 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || || | || ||||| ||| | || ||| | ||||||| Sbjct 23940 AATCTGGGCACCATCAAGTCCAGCAATCTCTGCACAGAGATTGTTGAATACA 23889 >seq54 Length=2421293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| || ||||| || || ||| | ||| ||| ||| Sbjct 1259658 ACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 1259599 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| | |||||||| || || ||||| |||||||| || Sbjct 1259598 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 1259539 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| |||| || | || | ||||||| | || || || || || | ||||| Sbjct 1259538 ATTTTGGCCTTGA-CGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTT 1259480 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| |||||||| Sbjct 1259479 GCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451886628374720