Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq105 118 2e-21 seq57 98.7 1e-15 >seq105 Length=1692671 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || || || ||||||||||| ||||||||| | Sbjct 1168117 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 1168058 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| | Sbjct 1168057 GGTGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 1167998 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || || ||||| | || || || || |||| | ||| |||||| Sbjct 1167997 ATCGTCTCCCCAAAAATGGCGTTCGACCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGC 1167938 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || ||||| ||||| || | |||| ||| || || || || || ||| Sbjct 1167937 TCCACAGCGTCAACGTCTCCATACAGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCT 1167878 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || ||||| ||| ||||| ||||| || | | ||| Sbjct 1165576 TCACCTACGACTCCCATAGGGGTTGGGCAATCAGCCGGAACTGGAGGAAGGGCACGGGTA 1165517 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| ||| | ||||||||||| ||||| |||||||| ||||| Sbjct 1165516 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAAGTA 1165457 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 || |||||||||||||| | ||| | |||| Sbjct 1165456 GGAGGACTGTCAATCATATGGGATCGTGCTA 1165426 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||| ||| || |||| ||| ||||| | |||||| |||| || ||||| | | | Sbjct 1166547 TAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGAACTTCCT 1166488 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | | ||| || || |||| |||||| || | ||||| ||||||||||||||||| | | Sbjct 1166487 TCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATCATGAGGC 1166428 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGA 9885 | || || | ||| ||| | || | || || || |||||| || Sbjct 1166427 CTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGA 1166384 >seq57 Length=2403620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||||||| || | ||||| || || | |||||||||| |||| ||| |||||| || Sbjct 1623437 TAATGATAAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCGCCTT 1623378 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | || || |||| |||||| || |||||||| |||||||||||||| | | | Sbjct 1623377 TCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 1623318 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGG 9893 | || || | || |||||||| | || || || | ||| | ||| |||| Sbjct 1623317 CTGGGACGAGCCCGAACACTTCCTGTCCGACGGCGAGCCGCTGCTCAGCGGG 1623266 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| | ||||| ||||| || || |||||||||||||| ||||||||| | || Sbjct 1630408 GTTTTGATGATGTTGAAACCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGA 1630349 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||| |||| ||| | | || ||||||| ||| || || || |||| ||| | ||| Sbjct 1630348 GAGTTGATGGGATTCCCAAACAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATG 1630289 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 ||||| ||||| |||| ||| || | ||| || | |||| ||| | || | || Sbjct 1630288 CTCTCTCCGAATATGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCGGGATAAAACTCC 1630229 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | || || | |||||| ||||| Sbjct 1630228 AGGGCGTCAATGTCGCCGTAGAG 1630206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723541350548800