Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq110 136 5e-27 seq784 98.7 1e-15 seq17 89.7 6e-13 >seq110 Length=1641499 Score = 136 bits (150), Expect = 5e-27 Identities = 896/1410 (64%), Gaps = 66/1410 (5%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 1622850 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 1622791 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || || || |||| Sbjct 1622790 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCC 1622731 Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 || || | |||||| | || | | |||| | |||||||| || ||||| Sbjct 1622730 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTC---TCCCACATGTCGTACTGG 1622674 Query 116080 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 ||||| || | | |||| ||||| ||||| | ||||| || ||||| | | | Sbjct 1622673 AGGATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGG 1622616 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 1622615 CGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 1622556 Query 116198 TTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || || ||| ||| | | |||| | | || || || || | || || || Sbjct 1622555 GCAGCTGAGCTTCG--GGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAG 1622498 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCC- 116313 ||| ||||| |||| || || || | || | | | || || | || || | || Sbjct 1622497 ACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTC---CGCT-TCAG 1622442 Query 116314 --ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 || || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 1622441 GAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGA 1622382 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 ||||| | | | || ||| | || |||| |||| ||| | |||| Sbjct 1622381 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGG 1622325 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 |||| || ||||| || || || | ||| ||||| |||||||| | | |||| Sbjct 1622324 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCG 1622265 Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 | || | || | ||| |||||||||| ||||| || || ||| ||| || | Sbjct 1622264 TGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAG 1622205 Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611 | |||||||||||||| || || ||||| || || || ||||||| || || || | || Sbjct 1622204 CGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACC 1622145 Query 116612 ATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 | | | | ||| || ||| || ||| ||| |||| ||| || || |||||| Sbjct 1622144 AGAGCTGCTGCGCCT-TCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAG 1622086 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCT-GGACAGA 116728 || ||| ||||| || ||| |||| ||| ||||| || | || || ||||| | Sbjct 1622085 AGCTTCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCAGG-ACATTCGCTGGGACACA 1622028 Query 116729 AGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 | ||||| | || | ||| || | ||||||||| ||||| |||||||| | Sbjct 1622027 TCAAGGACCA--GTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAA 1621970 Query 116787 CGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 116845 || |||| || || | | | ||| || | | || || || || ||||| Sbjct 1621969 GGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCA 1621911 Query 116846 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTG 116901 || || | | || |||||| || ||||| |||| |||| | ||| || Sbjct 1621910 GGAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCT 1621851 Query 116902 CGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 | | || |||||| || |||| || || ||| | || | ||||| || | Sbjct 1621850 TGTTG-CCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACC 1621792 Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT-CTGAC-ATCG- 117018 | || | || | ||| || || || | ||| ||| | | ||| | |||| Sbjct 1621791 AACCCGTTGGAGTTGCCGTTGGTGCC-----TGCGA----TGTAGCTTCCTGTCGATCGG 1621741 Query 117019 -TGGATGT-----GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072 || | | || || || || || || |||| || || | ||||||| | | Sbjct 1621740 ATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTC 1621681 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132 || || ||||||| || ||||| ||| |||| | |||| |||||||| || ||| Sbjct 1621680 AGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGAC 1621621 Query 117133 ATTTGTGGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 117190 | || |||| ||| || || |||||||||||||| || | |||||| ||||| || Sbjct 1621620 AGCTGCGGCCGGTTG--GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CAC 1621564 Query 117191 CT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCG 117249 | | |||| | ||||||||| | | | | | |||||| |||||| || || Sbjct 1621563 TTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCA 1621504 Query 117250 ATTGAGACCCGCATAAACATGTATTGGGGT 117279 | || |||| ||| | ||||| || ||| Sbjct 1621503 ACCGACACCCTCATGAGCATGTGCTGCGGT 1621474 >seq784 Length=80426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||| ||||| | ||||||||||||||||||| ||||| ||||| Sbjct 22290 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGAA 22349 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| || | ||||| Sbjct 22350 GCTGTGGGCATTGGGGCCAAAAGCAAACTGTT 22381 >seq17 Length=3631609 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 127553 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 127612 |||||||| || ||| || || ||||||||||| || | |||||||| |||| | || Sbjct 3277032 ATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATA 3276973 Query 127613 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| |||||||| |||||||| ||||||||||| || || || | |||||||| Sbjct 3276972 GCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAGCCACAAGACGCTC 3276914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613348976493120