Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq110 199 6e-46 seq50 84.2 3e-11 >seq110 Length=1641499 Score = 199 bits (220), Expect = 6e-46 Identities = 581/888 (65%), Gaps = 20/888 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| | ||| ||||| | ||| | |||||| | |||| | ||||||||| Sbjct 1622278 CTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 1622219 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| ||||| || | ||||||||| | |||| | || | ||| | || |||| || || Sbjct 1622218 CTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTC 1622159 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||| | | | |||| |||| |||||| |||||| Sbjct 1622158 GATGA-TGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACTC---TCCCTTCCT 1622103 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||| ||||| ||||| ||| | | || || || | || |||||| |||| | Sbjct 1622102 TCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA---GCCCAG 1622046 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||||| |||||||||||| ||||| ||| | | | ||| |||| ||| |||| Sbjct 1622045 GACATTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 1621986 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 |||| |||||||| | |||| || || || | ||| || | || | ||| || Sbjct 1621985 GGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 1621926 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 |||| |||| ||||| | | | |||| |||||| ||||| | ||| ||| | Sbjct 1621925 TCTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGA 1621866 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 || || || |||||||| || |||||||| || |||| | |||| |||||| Sbjct 1621865 AGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTC 1621806 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 |||||||||||||| ||||||| | | ||||| |||| |||| ||| | | | Sbjct 1621805 TCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATG---TAGCTTCCTG 1621749 Query 205416 CCCTCACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472 | | || || | ||| |||| |||||||||| |||||| || | |||| Sbjct 1621748 TCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGC 1621689 Query 205473 ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGC 205532 ||| | ||| ||| |||||||||| ||||| |||||| || | | ||| ||| Sbjct 1621688 ACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGC 1621629 Query 205533 ACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGA 205592 | | ||||| | |||||| || |||| |||||| || || ||||||| ||| Sbjct 1621628 AACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGA 1621569 Query 205593 AGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAA 205652 | | |||||| || |||||||||| | || || | || ||||| | Sbjct 1621568 ACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGA 1621509 Query 205653 TACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCT 205712 | || | | | |||||||| | ||| || |||| ||| ||| || |||| | || Sbjct 1621508 TCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCT 1621449 Query 205713 TGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 | ||||| |||| | ||| || || || | | || |||||| ||| Sbjct 1621448 TCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 1621401 Score = 181 bits (200), Expect = 2e-40 Identities = 352/512 (69%), Gaps = 12/512 (2%) Strand=Plus/Minus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCT 204162 ||| || ||||||| || ||||| | || || ||||||| ||||| ||| | Sbjct 1622974 GATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCGCTC 1622915 Query 204163 GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCG 204222 |||| ||| | ||||| ||||||| |||||| || |||||||||||||||| || Sbjct 1622914 CGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCG 1622855 Query 204223 GGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGT 204282 |||| | | |||| ||||| | | |||| | |||||||||||| | ||||| ||||| Sbjct 1622854 GGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGT 1622795 Query 204283 GCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCT 204342 | |||||||||||||| ||||| |||||| ||| | ||| |||| ||| || | | Sbjct 1622794 GGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTT 1622735 Query 204343 GCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTGGGT-TTCACGCCCCACATGTCGAA 204399 |||||| ||||||| | ||| | | || ||| ||||||||||| | Sbjct 1622734 TTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTC---TCCCACATGTCGTA 1622678 Query 204400 CTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTT 204458 ||| | |||||| | ||||| || ||||| ||||||| || ||| || |||| Sbjct 1622677 CTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTG 1622619 Query 204459 CTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGT 204518 | || |||| ||| ||| ||| |||| | ||| |||||||| |||||||| | || Sbjct 1622618 CGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 1622559 Query 204519 TTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGC 204576 | | | ||| || || | | || |||| | | || || | || |||| || Sbjct 1622558 TGAGCAGCTG--AGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGC 1622501 Query 204577 CAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 || ||||| || ||||| || | ||| |||| Sbjct 1622500 CAGACCCTGGACGCCGATCCCGATCGGCCTGT 1622469 Score = 96.9 bits (106), Expect = 6e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||| | | ||||||| | |||||| | ||| || || || |||| Sbjct 1623250 CCTGCTTCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGT 1623191 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | |||||||| |||||||| ||||||||| ||||| || || ||||| ||||| || | Sbjct 1623190 GGATGTTCAGCGACTGGCTCTGGTCGATG-AAGGCTCCACGGTCTGCCGCCATCTTCAGC 1623132 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||||||| || || ||||| || || || Sbjct 1623131 ACGGTCTTCTGGGAGATTTCCCAAACGGTTTT 1623100 >seq50 Length=2488032 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 200188 TACAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGA 200247 |||||| |||||| | | || ||||| ||||| |||||||| || |||||||| | || Sbjct 872907 TACAGAGTGGTTCAGAACCACCTGGACTCTGCAAGATGACCCCTGCAAAAAATACTATGA 872848 Query 200248 AGTGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 ||| ||||| | |||||| | || | || ||||||||||||| Sbjct 872847 AGTCCTCATGGTTAACCCCCTCCTGCTGGTGCCTCCAACCAAGG 872804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794950129473920