Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq63 223 3e-52 seq629 114 1e-19 seq27 89.7 4e-12 >seq63 Length=2302000 Score = 223 bits (246), Expect = 3e-52 Identities = 933/1467 (64%), Gaps = 12/1467 (1%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||||| ||| || || || || ||||| || | |||||| || ||||| || Sbjct 320277 TTTGTCGACGGCAGACACGTTTAGGATGCCGTTGGCGTCAATATCAAAGGTAACTTCGAT 320218 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 320217 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCCAAGAGCTCAAACTTCCCCAGGAGATT 320158 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || ||||| || | | || || ||| | | || || Sbjct 320157 GTTGTCCTTTGTCATGGCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTT 320098 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | |||| | | || || || || ||||||| | | Sbjct 320097 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGA 320039 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 ||| | ||||||| ||||| ||||| || | || || || | || | ||||| | Sbjct 320038 TAAGAGGTGTCATAACGCCACCGGCTGTCTCAATGCCCAGCGACAAGGGTGCCACATCCA 319979 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 319978 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 319919 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| || || ||||||||||| || | | | ||||||| | ||||||||| Sbjct 319918 CTGCACCATAGGCCACTGCTTCATCAGGGTTGATGCTCTTGTTTAGTTCTCTACCATTGA 319859 Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 319858 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 319799 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 |||||| | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 319798 CTTCATGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 319739 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | ||||| | |||||| || || ||||| || || || | | | | Sbjct 319738 GTGTTCCCCTAAAGAGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGTGATCGAGGTGT 319679 Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907 | | ||||| || || || | || |||| ||||| | | ||||| || || | Sbjct 319678 AAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGACA 319619 Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGAT 517963 | | || || | ||||| ||||| | ||||| | | ||| | | ||| Sbjct 319618 AGGTCCTCTTTGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTGGC 319559 Query 517964 TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 |||| || | || | ||||| || || || || ||| | | || | || Sbjct 319558 TGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTCGG 319503 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || |||||||| || || || | | || | || | ||| | | | || | || | Sbjct 319502 TTGTCAAAATCCTCTCCGCCGAGGTGTGTGTCCCCGGCCGTGGATTTCACCTCAAATATG 319443 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||||| |||| | || | | || ||| || || ||||| | ||||| || || Sbjct 319442 CCATCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGGTCAAAGATGAGG 319383 Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 ||||| ||| || | ||||||||| || || |||| || ||||| || || Sbjct 319382 ACATTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAGGCAATGGCTGCAGCTGTCGGC 319323 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| || || | | |||||| || || | || ||| ||||| || |||||||| Sbjct 319322 TCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTTGC 319263 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACC 518322 ||||| ||||| ||||| || || || || || || || |||| | || ||| | || Sbjct 319262 CTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTCCC 319203 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | | | || || ||| | |||||||| | | ||| || ||||| | ||| || Sbjct 319202 AGAA-AGGCCTCCGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCAGG 319144 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | || ||| ||| || |||| || | | | || || | || Sbjct 319143 ACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCGTT 319084 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 || || || || |||||| |||||| || || || || |||||| ||| ||| Sbjct 319083 GATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTTCT 319024 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 ||||| | ||||| |||||||| || || ||||| || || || ||| |||| | || Sbjct 319023 TCCAATGAGCCGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATGGCAACTTGGTTCTT 318964 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||| ||||| || ||||| || ||||| | || || |||||||| | Sbjct 318963 GGCAGCATCCCCAATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTCCT 318904 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || ||||||||||| || |||||||| ||||| |||| || | || || |||||| Sbjct 318903 GTTGCCTTGATCATTGGCGATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAAGA 318844 Query 518683 AAAAGTTGTTCCTAAATCAATACCAAT 518709 | || || || | ||| || ||||| Sbjct 318843 GTAGGTGGTGCCCAGATCGATGCCAAT 318817 >seq629 Length=126638 Score = 114 bits (126), Expect = 1e-19 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||| || || || ||| | |||| |||||||||||||||||||| Sbjct 38749 CAAAAACTGTATTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 38808 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 38809 TCTCTGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 38868 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | | || ||||| | ||| | Sbjct 38869 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAATAGGTGGTTCCAAGATCGA 38928 Query 518703 TACCAA 518708 | |||| Sbjct 38929 TTCCAA 38934 >seq27 Length=3139199 Score = 89.7 bits (98), Expect = 4e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| ||||| || |||||||| | ||||| || ||||| || |||||||| ||||| Sbjct 1245686 CACATTGAGAATGCCGTTGGCATCAATGTCAAAGGTCACTTCGATCTGAGGGACTCCTCT 1245745 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 ||||||| || || || ||| | |||| | |||| ||||||||||||| || Sbjct 1245746 GGGAGCAGGCGGAATACCAGTCAATTCAAATTTCCCCAAGATATTATTATCTTTGGT 1245802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779798572198192