Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq110 149 7e-31 seq784 100 3e-16 seq17 96.9 4e-15 >seq110 Length=1641499 Score = 149 bits (164), Expect = 7e-31 Identities = 951/1498 (63%), Gaps = 54/1498 (4%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || || | | ||||| |||| ||| || |||||| Sbjct 1622944 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGAC 1622885 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | || || | |||||||| | ||||| | || | Sbjct 1622884 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 1622825 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 1622824 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 1622765 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | || |||| |||||| || | | |||||| | | Sbjct 1622764 GCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTC 1622705 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | |||||| |||| | ||| || Sbjct 1622704 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG--CC 1622648 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| | ||||| |||| || | || | || | || ||||| |||||||||| || Sbjct 1622647 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 1622588 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || ||||| | || | | || ||||| || || | Sbjct 1622587 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGG 1622528 Query 106258 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 1622527 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 1622469 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 | ||| | || || | ||| ||| || || | || |||| |||| || Sbjct 1622468 GGCGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGT 1622409 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 106436 | || ||||| | | ||| |||| || || | | || ||||| || Sbjct 1622408 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG-- 1622351 Query 106437 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 106496 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| | Sbjct 1622350 -CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 1622292 Query 106497 CCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 |||| |||||||| | | || || || | |||| | ||| || || |||| | Sbjct 1622291 CCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGT 1622232 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 106616 ||| ||||| ||||| |||||| || |||||||||||||||||||| ||||| || | Sbjct 1622231 TCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTT 1622172 Query 106617 CCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCC 106675 | ||||| |||| || || || | ||| | | | ||| || || | || | Sbjct 1622171 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTCTTCACT 1622113 Query 106676 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGA 106734 | || ||| ||| || || |||||||| || |||||||| ||| | || ||| Sbjct 1622112 CTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTCGTC 1622054 Query 106735 GAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGACCATTGACCACCCT--CCTCAACCCG 106791 || || || | || || ||||| | | ||||| | || | ||| || | Sbjct 1622053 CAGCCCAGG-ACATTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACTCT 1621997 Query 106792 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 106851 ||||||||| ||||| || ||||||| || | || || ||||| | ||| || Sbjct 1621996 CTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTC 1621937 Query 106852 GTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 106910 | ||| ||| || | | ||| |||||||| | | || |||||||||||| | Sbjct 1621936 CTTTCCTGTGTT-CTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCA 1621878 Query 106911 GATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCT 106963 |||| | |||| | || ||| | | ||||| || | || || || || Sbjct 1621877 GATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTACCGAGCG 1621822 Query 106964 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 107023 ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 1621821 GTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCC---- 1621766 Query 107024 ATACGAGATTTATTGGCTCTCACATC--ATGGATGT-----GCATCCCAATACCCCCAGC 107076 | ||| | || || || ||| ||| | | || || || || ||||| Sbjct 1621765 -TGCGATGTAGCTT-CCTGTC-GATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGC 1621709 Query 107077 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 107136 |||| || || |||| |||| | | || || | ||||| || | ||| ||| || Sbjct 1621708 GGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTC 1621649 Query 107137 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAG 107194 ||| |||||| |||||||||||||||| |||||| | ||| || || || |||||| Sbjct 1621648 CTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG--GTCCCGGCGTTGAAG 1621591 Query 107195 AGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGAC 107253 ||||| || | ||||| ||||| || | | |||| || ||| ||||| | | | Sbjct 1621590 AGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGC 1621532 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 | || |||||| ||||||||| || | | ||| | ||| | ||||| || ||| Sbjct 1621531 GGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGT 1621474 >seq784 Length=80426 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| |||||| || | ||| ||||| || | ||| ||| || || || Sbjct 23875 CTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 23934 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||||| |||| ||||||| || ||||||||||||||||| ||||| || Sbjct 23935 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 23994 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| ||||| |||| || || || | ||| Sbjct 23995 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 24027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 |||| ||||| || |||||||||| |||| || |||||||||||||| || || Sbjct 22716 GCCAGCTCACAACTGGCCTCCAGGGCGGCGTAGTAGATGGTTTCAAAGATGTGAATGTTG 22775 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 106288 | || |||||| ||||||| |||||| | ||||| |||| || ||| Sbjct 22776 AGTAACTGGGCTTCTGGGCTTTCAAATGGGTAGCGCATGAGGATAAAGGCATCAGCCAGA 22835 Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 106333 || || ||||| | |||||||| ||||| ||| | || |||||| Sbjct 22836 CCCTGCACACCGATTCCAATAGGCCTGTGACGCTTGTTGGACTTT 22880 >seq17 Length=3631609 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| ||||| || ||| || |||||||||||||| || | ||||| Sbjct 3277046 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 3276987 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| ||| || ||||| |||||| || |||||||| || |||||||| ||||| | Sbjct 3276986 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 3276927 Query 117413 CAAAAAGGCGCTC 117425 | | ||| ||||| Sbjct 3276926 CCACAAGACGCTC 3276914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589828643951680