Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq176 140 7e-28 seq54 131 4e-25 seq9982 114 3e-20 seq4001 113 1e-19 >seq176 Length=1137095 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 797710 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 797651 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| ||||||||||||||||| || ||| Sbjct 797650 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGA 797591 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| |||||||||||||| || ||| ||||| || ||||| | ||| Sbjct 797590 ATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTC 797534 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 797533 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 >seq54 Length=2421293 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 1259659 AACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 1259600 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| || | || ||||| || || ||||| ||||| || || Sbjct 1259599 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTG 1259540 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||||||||||||||||||||| |||||| || ||||| | || || Sbjct 1259539 GATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTT 1259480 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 1259479 GCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 |||||||| |||||||| || || |||||||| |||| || || | |||||||| ||| Sbjct 1257646 AGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 1257587 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| || | || ||||| || || ||||| || || || || || Sbjct 1257586 TGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATC 1257527 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||||||||||| || ||| |||||| || ||||| | || || Sbjct 1257526 TTGGCCTTAACGTTCTCAATGGTATC---ACTGGGTTCCACCTCCAGGGTGATGGTTTTG 1257470 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 1257469 CCGGTGAGGGTTTTCACAAAGATCTGCAT 1257441 >seq9982 Length=962 Score = 114 bits (126), Expect = 3e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || ||||| || || ||||| |||| || || | |||||||| Sbjct 929 ACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 870 Query 194992 AGCTGCTTA-CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || ||||| || || ||||| || || || || Sbjct 869 AGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 810 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| |||||| |||||||||||||| |||||| || ||||| | || || Sbjct 809 GATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTT 750 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 749 ACCAGTGAGGGTCTTGACAAAGATCTGCAT 720 >seq4001 Length=6841 Score = 113 bits (124), Expect = 1e-19 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || |||||||| || || |||||||| |||| || || | ||||| || Sbjct 6680 AACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTC 6739 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || ||||| || || ||||| || || || || Sbjct 6740 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 6799 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || |||||| |||||||||||||| Sbjct 6800 GATCTTGGCCTTGACATTCTCAATGGTGTC 6829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109188311312744