Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq54 109 4e-19 seq9982 105 4e-18 seq176 104 2e-17 >seq54 Length=2421293 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34775 CAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAG 34834 || ||||| ||| || ||||| || || ||||| || ||| | || |||| ||||| Sbjct 1257647 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 1257588 Query 34835 CTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAAT 34894 ||| ||||||||||| || || | |||||||| | || | |||||||| || || Sbjct 1257587 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 1257528 Query 34895 CTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||| || ||| | || | |||| || || || || | ||| |||||||| || Sbjct 1257527 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCC 1257468 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||||||||||||||| || Sbjct 1257467 GGTGAGGGTTTTCACAAAGATCTGCATCTT 1257438 Score = 105 bits (116), Expect = 4e-18 Identities = 168/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 34747 AATCATTTCCT-----CCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAAT 34801 |||||||| || ||||||| | | ||| | ||| | ||| ||||||||| || Sbjct 1259689 AATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGAT 1259630 Query 34802 GTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861 ||| ||||| || ||| | || |||| ||||||||||| || ||||| || || | || Sbjct 1259629 GTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTG 1259570 Query 34862 CTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTC 34921 |||||| | || | ||||| || || || || |||||| | || | || Sbjct 1259569 CTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC 1259510 Query 34922 ACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || | ||| |||||||| || ||||| ||||| |||||||| ||||| Sbjct 1259509 GCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 Query 34982 A 34982 | Sbjct 1259449 A 1259449 >seq9982 Length=962 Score = 105 bits (116), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTT-CCGGCAA 34848 ||||||||| ||||| ||||| || ||| | || |||| |||||||| ||| ||||||| Sbjct 912 TTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAA 853 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || | |||||||| | || | |||||||| || || || ||||| Sbjct 852 AGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTAGCCTTGAC-- 795 Query 34909 ATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 || || || | || | || || || || | ||| |||||||| || ||||| ||||| Sbjct 794 ATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTT 735 Query 34967 CACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 734 GACAAAGATCTGCATGTT 717 >seq176 Length=1137095 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||||||||||| | | |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 797729 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 797670 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | || |||| ||||||||||| || ||||| || || | |||||||| | || Sbjct 797669 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 797610 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || || || |||||| || ||| | || | |||| || ||| || Sbjct 797609 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || | ||| ||||| || || ||||| || ||||| || |||||||| ||| Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTC 797498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324551970069696