Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq110 96.9 4e-15 >seq110 Length=1641499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 422/660 (64%), Gaps = 6/660 (1%) Strand=Plus/Minus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||| || ||||||||||| ||||| | || || || ||||| |||| || || ||||| Sbjct 1622212 GTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT 1622153 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAG-CTTTATTATCATGTTCGTATT 48111 | | ||| | | ||||| | || |||| || | || | || |||| Sbjct 1622152 GGCGTACCAGAGCTGCTGCGCCTTCACCACC-CTCTTCACTCTCCCTTCCTTCTCATATT 1622094 Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATTA 48170 | || || | |||||| || || || || | ||| | || | |||||||||||| | Sbjct 1622093 TGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCAC-TCGTCCAGCCCAGGACATTCGCTG 1622035 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 ||||||||||| ||||| |||| | | | ||||| |||| || | || || ||| Sbjct 1622034 GGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATC 1621975 Query 48231 CA-AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 || ||| || ||| | || || | ||| | || || || || | ||| | || || Sbjct 1621974 CACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAG 1621916 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || || || || | | || |||||||| || | ||| || || | | || || Sbjct 1621915 CTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGG 1621856 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || || || || || || || | || | || || ||||| |||||||| | ||| || Sbjct 1621855 TCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGG 1621796 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 || | || || || | || ||||| || | || || ||||| | | || || Sbjct 1621795 CACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATGCA 1621736 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || | | | || || || || || || || || || || ||| | || ||||| Sbjct 1621735 GCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGT 1621676 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 || || || ||||| || || || || |||| | || || ||||| |||| || Sbjct 1621675 GTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTG 1621616 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| | || || | || || | || ||||| || || | ||||| ||||| || Sbjct 1621615 CGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGA 1621556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561963832140480