Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq63 187 2e-41 seq27 114 1e-19 seq176 109 4e-18 seq629 104 2e-16 seq9982 87.8 1e-11 >seq63 Length=2302000 Score = 187 bits (206), Expect = 2e-41 Identities = 406/597 (68%), Gaps = 17/597 (3%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || || | || |||| ||||| Sbjct 318817 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 318876 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| |||||||||||||| ||||| || ||||| || || | || || || Sbjct 318877 GAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACCGAC 318936 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||| ||||| || || | |||| ||| || || || ||||| Sbjct 318937 ACAGAGAGGCTCATTGGGGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 318993 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| ||||| | ||||||||||| ||| |||| | || ||| | Sbjct 318994 ACAATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCT 319053 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | ||||| ||| | | | || | ||||| || | | | || | Sbjct 319054 GACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAA-AGTCCAGGT 319112 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||||| |||| ||| | || ||| | ||||| || ||||| | Sbjct 319113 GGAAT-ATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCCTGG 319171 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | ||||||| | ||| ||| || ||| | || || || || |||| || || | Sbjct 319172 TTAAAATGAGAGAAATAGCGGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCA 319231 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| || ||| | ||||| || || ||||||||| || Sbjct 319232 CAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCT 319291 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| |||||||| || || || ||||| || || ||||| || |||| || || | Sbjct 319292 CCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCTACGGCC 319351 Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGA---TTGTGGAGG 550581 |||||||| || || || | || | ||||| ||||||||||| | ||||||| Sbjct 319352 TTGATAAAGGCAAAA-GAGGA-GAGCGCAATGTCCTCATCTTTGACCTTGGTGGAGG 319406 Score = 158 bits (174), Expect = 1e-32 Identities = 447/682 (66%), Gaps = 10/682 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || ||||| || | || || | || || | ||||| | | ||||| | Sbjct 319591 ACAGCTTGTGAGAGAGCAAAGAGGACCT-TGTCCTCCAGCACTCAGGCAAGCATTGAGAT 319649 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || ||| | |||||||| ||||| | | | || | || | ||||| || || || Sbjct 319650 TGACTCACTCTTTGAGGGCATTGACTTTTACACCTCGATCACAAGGGCACGCTTCGAGGA 319709 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || || |||||||| |||| | || ||||| || | | || |||| | Sbjct 319710 GCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGC 319769 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||||||||| | |||||| |||| || |||||||| ||||||||||| || Sbjct 319770 TAAGCTGGATAAATCCAAGATCCATGAAGTTGTCCTAGTTGGTGGCTCTACAAGAATCCC 319829 Query 552152 TAAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 ||||| | ||| | | || ||| |||||||||| | || |||| | || Sbjct 319830 CAAAAT---CCAAAAGCTCCTGCAGGACTT-CTTCAATGGTAGAGAACTAAACAAGAGCA 319885 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 | || || ||||| || || ||||||||||| ||| | || || ||||| || || Sbjct 319886 TCAACCCTGATGAAGCAGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGTG 319945 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | || ||||| | ||| || | | || | ||||| | || | || || || Sbjct 319946 ACACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGTCGCTGGGCA 320005 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | || |||| || || ||||||| ||||||| | |||| || || || || | Sbjct 320006 TTGAGACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCACAA 320065 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 | | ||| | || || || || |||||||| || | | || ||||| | | Sbjct 320066 AGCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCTGATTCAGGTCT 320125 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 |||||| || ||| | || || || || |||| || || | ||| | | | Sbjct 320126 ATGAAGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTTGG 320185 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 || ||||||||||||| | || || || || || |||||||| || ||||| || |||| Sbjct 320186 GTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGATATTGACGCCA 320245 Query 552568 ATGGAATTTTGAATGTGACTGC 552589 | || || | || ||| |||| Sbjct 320246 ACGGCATCCTAAACGTGTCTGC 320267 >seq27 Length=3139199 Score = 114 bits (126), Expect = 1e-19 Identities = 107/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||||| Sbjct 1248035 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGATG 1247976 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || ||||| |||||||||||||||||||| || || || || Sbjct 1247975 CTGGTACCATCTCTGGCCTCAATGTGCTTCGTATTATCAATGAACCCACAGCCGCAGCCA 1247916 Query 550518 TTGCATATGGACTTG 550532 |||||||||| |||| Sbjct 1247915 TTGCATATGG-CTTG 1247902 >seq176 Length=1137095 Score = 109 bits (120), Expect = 4e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| || ||||| || || || ||||| ||| | ||| || ||||| || | || Sbjct 797723 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGACAGG 797666 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| || ||||| || || || ||||| ||||||||||| Sbjct 797665 GTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATG 797606 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| ||| || || |||||| |||||| || | | || || Sbjct 797605 CCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTC 797547 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || ||||| |||||||| ||||| Sbjct 797546 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 >seq629 Length=126638 Score = 104 bits (114), Expect = 2e-16 Identities = 137/187 (73%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | |||||||| ||| ||||||||||| | || |||| ||||||||| Sbjct 38932 GGAATCGATCTTGGAACCACCTATTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 38873 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| ||||| ||||| || || || ||||| ||||||| || || Sbjct 38872 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACAGATACA 38813 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAATACT 550174 || | |||| |||||||| || |||| | ||| || || ||||||||||| Sbjct 38812 GAGAGGCTGATTGGAGATGCAGCCAAGAATCAGGTTGCCA-TG--AACCCTACCAATACA 38756 Query 550175 ATTTTTG 550181 |||||| Sbjct 38755 GTTTTTG 38749 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| || || || |||||||| || ||||| || || || |||| Sbjct 38252 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACGAAGGATG 38193 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 38192 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCGACTGCAGCTGCTA 38133 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 38132 TCGCCTATGGGCTGGACAA 38114 Score = 91.5 bits (100), Expect = 1e-12 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| |||||||||||||||||||| || || || ||||| || ||||||||||| ||||| Sbjct 37016 AGGAATTCCTCCTGCTCCTCGTGGTGTTCCACAGATTGAGGTGACTTTCGATATTGATGC 36957 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 ||||| || ||||||| ||||| Sbjct 36956 TAATGGTATCATGAATGTCTCTGCT 36932 >seq9982 Length=962 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||||||||| || ||||| || || ||| |||||| || ||||| || | || || Sbjct 942 CCTGAGACGAAGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 883 Query 563313 TCTTGAATCTTCAAGTTGTTTT-CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | |||||| || || ||| |||||||| || || || ||||| ||||| || || | Sbjct 882 GCGGCCATCTTCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGC 823 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 | || ||||| || ||||| || || |||||| || || || | | || || Sbjct 822 CCTCCTTATCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGT-TCCACCTCC 764 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||||||||| || || || || || || ||||| Sbjct 763 AGGGTGATGGTTTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028204886789680