Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq28 163 2e-35 seq3124 100 2e-16 >seq28 Length=3093535 Score = 163 bits (180), Expect = 2e-35 Identities = 137/168 (82%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| |||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| Sbjct 1720805 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTC 1720864 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| ||||| | ||||||| |||||||| ||||| | ||| ||||||||||| Sbjct 1720865 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 1720924 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 1720925 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 1720972 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 1719918 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 1719977 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || |||||||| | || | |||||| |||||||| || ||||| ||||||| Sbjct 1719978 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 1720037 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||| |||||||| | || |||||| || || || ||||| Sbjct 1720038 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 1720078 >seq3124 Length=9938 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||||||||||||||| | ||| |||||| || |||| || || ||||| || ||||| || Sbjct 3783 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 3842 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||| ||||| || ||||| | |||||| |||| | ||||| Sbjct 3843 GAACCAGGTCTTCCTGCCCATGACCACCACATTCTTCCTGCCT 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408514852082936