Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq19287 172 1e-38 >seq19287 Length=504 Score = 172 bits (190), Expect = 1e-38 Identities = 249/349 (71%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 15627 AGTTTACCGTGGAGCCGTCCGTGCAGCAGACGCTGGAAGACCAGATCCAGCAGTCCGCCG 15686 |||| | |||| ||||| |||| |||||||| |||||| | |||| ||| |||| | || Sbjct 401 AGTTCAACGTGCAGCCGACCGTCCAGCAGACCCTGGAAACCAAGATGCAGGAGTCGGTCG 342 Query 15687 CTTTCCTGACGCTGATTAACATCACGCCGGTCACTGAACAGTCAGGACAGTTGCTGGGGC 15746 | ||||| | |||| ||| ||| || ||| |||| | ||| || | | || Sbjct 341 CCTTCCTCGGGATGATCAACGTCATCCCTGTCGATGAAATGAAAGGCCAAAAGGTCGGTA 282 Query 15747 TGGGCGTTGGCAGCACCATTGCCGGAACCACCGATACCACCACCAAAGAGCGCGAGCCTA 15806 | ||| | ||||||||| ||||| |||| | ||| ||||||||| ||| |||| | Sbjct 281 TCGGCATCACCAGCACCATCGCCGGTCGCACCAACACCGACACCAAAGACCGCCAGCCCA 222 Query 15807 CCGATCCG-ACGCTGATGGAAGACGTGGAATACAAATGCGAACAGACCAACTTTGATACG 15865 | | ||| ||| | | | ||| | ||| |||||| ||||||||||| || || Sbjct 221 ACAACCCGCACGGTC-TCTACGACCAGAGCTACGAATGCGCCCAGACCAACTTCGACACC 163 Query 15866 GTGCTGACCTACGCAAAACTGGACCTGTGGGCCAAGTTCCAGGACTTCCAGGTGCGTATC 15925 | | ||||||| | | ||| ||||||||||||| ||||||||| ||| | Sbjct 162 CAGATCACCTACGGCCAGATCGACGCCTGGGCCAAGTTCCCCGACTTCCAGACCCGTGTT 103 Query 15926 CGCAACGCCATCGTCAAGCGTCAGGCGCTGGACCGCATCATGATCGGCT 15974 || |||||||| ||| ||||||| ||||||||||||||||||||||| Sbjct 102 CGTGACGCCATCCTCACCCGTCAGGGGCTGGACCGCATCATGATCGGCT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109026081518736