Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq110 374 2e-98 seq233 105 1e-17 seq784 87.8 3e-12 >seq110 Length=1641499 Score = 374 bits (414), Expect = 2e-98 Identities = 868/1293 (67%), Gaps = 34/1293 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGC 221424 || ||||||| ||||||||| ||| | | |||| | |||| | || || ||||| Sbjct 1622649 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCA-GCTGGCCTCCAGGGC 1622591 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 ||||||||||||||||| |||||| ||||||| || || |||||| ||| Sbjct 1622590 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAA 1622531 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 || |||| || ||| |||||||||| ||||| || ||||| ||||| ||||| Sbjct 1622530 CGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 1622471 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||| | | ||||||||| ||||||| || || || || |||||| |||||| | || Sbjct 1622470 GTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTT 1622411 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||||||||| ||| || || || || |||||||| | | ||| | Sbjct 1622410 GTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA-----A 1622356 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 || | | | |||| | ||| ||| ||||| | | ||||||||| || Sbjct 1622355 GTCCGCTCTGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTTGCA 1622306 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 |||||||||||||||||| |||| |||| | | ||| || ||||||||||||||||| Sbjct 1622305 GACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTT 1622246 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||||| | || || ||| || ||| |||||||||||||||||| | Sbjct 1622245 GATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTA 1622186 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 ||| || || || ||| | | | | || || |||||| | ||| || ||| Sbjct 1622185 GGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG-CTGCGCCTTCA 1622127 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 || |||||| ||| || || ||| ||||| ||| |||||| | || |||| | Sbjct 1622126 CCACCCTCTTCACTCTCCCTTC---CTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCT 1622070 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 | || | ||||||||| || ||||| | ||||||||||| ||||| || || Sbjct 1622069 CTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTGGGACACATCAAGGACCAGTCCTGGT 1622010 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 || | || |||| |||||| ||||| |||||||||| || | || || ||||||| Sbjct 1622009 TGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGG 1621950 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 | |||||||||| || |||| ||| |||| |||| |||||||| | ||| || Sbjct 1621949 CTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGT 1621890 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 |||| ||||||||||| | ||| | || ||||||| ||||||||| ||||| || || Sbjct 1621889 GCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGT 1621830 Query 222204 TCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 || | |||| | | | || |||| |||| |||||||| ||||||| Sbjct 1621829 ACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGG 1621770 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACCACC 222321 |||| ||||| || | | | | || | | || | | || |||||| || || Sbjct 1621769 TGCCTGCGATGTA-GCTTC-CTGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCC 1621712 Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381 ||| || || || | ||||| ||| || ||||| |||||| || || ||| Sbjct 1621711 AGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 1621652 Query 222382 CTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAA 222441 ||||| | | ||||| || ||| |||| ||| | | ||| | |||||| || Sbjct 1621651 GTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAA 1621592 Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501 || || ||| |||||| || || | | |||| || | ||| ||||| ||| | Sbjct 1621591 GAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGC 1621532 Query 222502 TCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCT 222561 | |||||| |||||| ||| | | |||||| ||||| ||| || | Sbjct 1621531 GGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCG 1621472 Query 222562 CT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCC 222618 || |||| ||| | || || |||||||| || |||||||||||||| || Sbjct 1621471 CTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCC 1621415 Query 222619 AAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAA 222650 ||| ||||| ||| ||| |||||| ||| || Sbjct 1621414 GAAGAAGTTGTAGGAGAAA-TCTCTGTCGTAAA 1621383 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || | ||| ||| |||||| | ||| ||| || | Sbjct 1622941 CATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGAT 1622882 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || |||||||| | ||| | ||| ||| ||| |||||| Sbjct 1622881 CTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGA 1622822 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| || Sbjct 1622821 CTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCT 1622762 Query 221245 GTT 221247 ||| Sbjct 1622761 GTT 1622759 >seq233 Length=880882 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || ||||||||||| ||||| ||| |||||||| || ||||||||| Sbjct 604108 TGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCT 604049 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||||| ||| ||| |||||||||||||||| | | Sbjct 604048 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAG 603989 Query 26003 ACGAGG 26008 |||||| Sbjct 603988 ACGAGG 603983 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||| ||| Sbjct 603226 AACCCGTTCGACTTCATGGAGAACATTTCTTTGGAGGGGAAGACCAACTTCTTTGAGAAG 603167 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 603166 CGGGTCGGGGAGTACCA 603150 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 596101 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 596160 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 596161 CGGGTCGGGGAGTACCA 596177 >seq784 Length=80426 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| || ||||||| || || || ||||||| | |||||| || Sbjct 24349 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 24408 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| |||| |||||||||||||| | ||||| |||||||||||||| Sbjct 24409 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACATCAGCATGCCACGGCTCCAG 24468 Query 222157 ATAGAC 222162 || || Sbjct 24469 GTACAC 24474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928605250926080