Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq63 161 6e-34 seq27 100 2e-15 seq629 91.5 1e-12 >seq63 Length=2302000 Score = 161 bits (178), Expect = 6e-34 Identities = 368/552 (67%), Gaps = 4/552 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || ||| | || || || ||| |||||| | || | || ||| Sbjct 318809 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 318868 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| || |||||||| ||||| || || ||||| || || || | | Sbjct 318869 GAAAAGTGGAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 318928 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || || || ||||| |||||||| || | |||| ||| || || Sbjct 318929 TTACCGACACAGAGAGGCTCATTGGGGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 318988 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| |||| Sbjct 318989 CCAACACAATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 319048 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-- 474621 | ||||| ||| | ||||| || |||||||| || | || || || | | Sbjct 319049 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 319108 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | ||| |||| ||| ||| | || ||| | ||||| || ||||| Sbjct 319109 AGGTGGAATATAA--AGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGT 319166 Query 474682 TTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | ||||||| | ||| ||| | | ||| ||||| || | |||| || Sbjct 319167 CCTGGTTAAAATGAGAGAAATAGCGGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGT 319226 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || || ||||| || ||||||||||| ||| | ||||| || || ||||| ||| Sbjct 319227 CATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGT 319286 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || | || || |||||| | || || || ||||| || ||||| || || |||| || Sbjct 319287 GATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCTA 319346 Query 474862 TGGTCTTGATAA 474873 || |||||||| Sbjct 319347 CGGCCTTGATAA 319358 Score = 131 bits (144), Expect = 1e-24 Identities = 418/635 (66%), Gaps = 20/635 (3%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| || || ||||| || ||||| | | | || || |||||||| | Sbjct 319643 TTGAGATTGACTCACTCTTTGAGGGCATTGACTTTTACACCTCGATCACAAGGGCACGCT 319702 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 | || || | || || |||||||| |||| | || || ||||| | | || Sbjct 319703 TCGAGGAGCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTAC 319762 Query 475668 GAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||| |||| || || ||||| |||| |||||||| |||| || || || || || ||| Sbjct 319763 AAGATGCTAAGCTGGATAAATC-CAAGATCCATGAAGTTGTCCTAGTTGGTGGCTCTACA 319821 Query 475727 AGAATTCCAAAAATAAGAGAAATGCT--TTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 ||||| || ||||| ||| ||| | || | | || ||||||| | | |||| Sbjct 319822 AGAATCCCCAAAATCC---AAAAGCTCCTGCAGGACTTCTTCAATGGTAGAGAACTAAAC 319878 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 | || | || ||||||||||| || || ||||| || || ||||| || ||||| | Sbjct 319879 AAGAGCATCAACCCTGATGAAGCAGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTC 319938 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTT 475901 ||| | || ||||| | || ||| | || | || || | || | | Sbjct 319939 ATGGGTGA--CACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGT 319996 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || |||| |||| || || ||||||| |||||| | |||| || | | Sbjct 319997 CGCTGGGCATTGAGACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCA 320056 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || || Sbjct 320057 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCT 320114 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACT-TGGAACTT 476078 || || ||| ||||||||| ||| | || || || || || || |||| || Sbjct 320115 GATTCAGGTCTATGAAGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTT 320174 Query 476079 TTA-ATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 | | ||||| ||| ||||||||||||||||||| || || || || |||||||| ||| Sbjct 320175 TGAGCTCTTG--GGTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTT 320232 Query 476138 GATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||||||| || || || || || || || |||| Sbjct 320233 GATATTGACGCCAACGGCATCCTAAACGTGTCTGC 320267 >seq27 Length=3139199 Score = 100 bits (110), Expect = 2e-15 Identities = 107/137 (78%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089 ||||| ||||| | || ||||||||||| | ||||| || ||| ||| ||| Sbjct 1245820 GAAGGGGAAAGGGCCATGACCAAAGATAATAATAT-CTTGGGGAAATTTGAAT--TGACT 1245764 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| Sbjct 1245763 GGTATTCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAAGTGACCTTTGACATTGATGCC 1245704 Query 476150 AATGGTATTCTTAATGT 476166 || || ||||| ||||| Sbjct 1245703 AACGGCATTCTCAATGT 1245687 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || ||||| ||||| | | | | || |||| ||| Sbjct 1248701 GCAGTAGGCATTGATCTGGGTACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 1248642 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || ||||| |||||| ||||| | || || Sbjct 1248641 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACACCAAGTTATGTGGCCTTCACA 1248582 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || ||||||||||||||||| || Sbjct 1248581 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 1248550 >seq629 Length=126638 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | ||||| || || ||||| | ||| | || |||| ||| Sbjct 38938 GCAGTTGGAATCGATCTTGGAACCACCTATTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 38879 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || || || ||||| ||||| |||| || Sbjct 38878 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 38819 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || ||||||||||| || || |||| | ||| || ||| ||| Sbjct 38818 GATACAGAGAGGCTGATTGGAGATGCAGCCAAGAATCAGGTTGCCATGAACCCTACCAAT 38759 Query 474509 ACTATTTTTG 474518 || |||||| Sbjct 38758 ACAGTTTTTG 38749 Score = 86.0 bits (94), Expect = 4e-11 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 476072 GGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130 |||| ||| ||| ||| ||| |||||||||||||| | || ||||| || ||||| || Sbjct 37032 GGAAGTTTGAAT--TGACAGGAATTCCTCCTGCTCCTCGTGGTGTTCCACAGATTGAGGT 36975 Query 476131 TACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||||||||| |||||||| | ||||| ||||| Sbjct 36974 GACTTTCGATATTGATGCTAATGGTATCATGAATGTCTCTGCT 36932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267294193413536