Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq110 161 1e-34 seq17 96.9 4e-15 seq784 86.0 7e-12 >seq110 Length=1641499 Score = 161 bits (178), Expect = 1e-34 Identities = 953/1497 (64%), Gaps = 54/1497 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| | | || ||||||||| |||||| || | | | Sbjct 1621475 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCC 1621534 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 1621535 GTCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 1621593 Query 75331 CAATGCTGGTAC--ACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | |||||| |||||||||||||||| |||||| ||||| Sbjct 1621594 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGAC 1621651 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 1621652 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 1621711 Query 75449 GGGGGTATTGGGATG-----CACATCCAT--GATGTGAGAGCCAATAAATCTCGTATTCG 75501 || || || || || | | ||| ||| || || || | ||| | Sbjct 1621712 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGAT-CGACAG-GAAGCTACATCGCA---- 1621765 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || | || | || | | || ||||| | || | ||| ||| Sbjct 1621766 -GGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACAC--- 1621821 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTACTTGG 75614 |||| ||| || | | ||||| | |||| ||| || |||| | || ||| Sbjct 1621822 -CGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTATCTGG 1621880 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAA 75673 | |||||||| ||| | | |||||||| ||| | | || ||| ||| | || Sbjct 1621881 AGCCATGGCACTTCGACGTGTTTGAGTTCCTGGAGCTGAAGA-AGAACACAGGAAAGGAG 1621939 Query 75674 GAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 ||| | ||||| || || | || ||||||| || ||||| ||||||||| | Sbjct 1621940 GAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAGA 1621999 Query 75734 GT--TGAGGAGGGTGGTCAATGGTCTCTTTTCTGT-CCAGACAAGGCACCAGGTCTCTCC 75790 || ||| | || | ||||| | | ||| |||| || | || || || | Sbjct 1622000 GTGGAGAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAATG-TCCTGGGCTGGAC 1622056 Query 75791 GA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC 75849 || || | ||| |||||||| || |||||||| || ||||| |||| || |||| Sbjct 1622057 GAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGT 1622115 Query 75850 CAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 || | | || || ||| | | | ||| | || || || | || ||||| || | Sbjct 1622116 GAA-GAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAA 1622174 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 | || || || || ||||| |||||||| ||||| ||| |||||| ||||| |||| Sbjct 1622175 CCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAACC 1622234 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 |||| || |||||| || || || |||||||| | | |||||||| ||||| | Sbjct 1622235 TGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGACG 1622294 Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTC 76088 || ||| || ||||| |||| || |||||||| | ||| |||| |||| | Sbjct 1622295 AGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG---C 1622351 Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 | ||||| || | | || || |||| ||| | | ||||| || ||| Sbjct 1622352 GGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACA 1622411 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACA 76208 |||| |||| || | || || ||| ||| | || || | ||| |||| Sbjct 1622412 AGATCATCGACATCAACTACTACCCGGTTCCTGAAGCGGAGACTTCCAACAAGCGCCACA 1622471 Query 76209 GACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCA 76267 | || || || | || || || ||||| || || | || || || ||| || || | Sbjct 1622472 GGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGC-ACCCG 1622530 Query 76268 TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCA 76327 || || ||||| || | | || | ||||| || ||||| || ||||| Sbjct 1622531 TTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCC 1622590 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 |||||||||| || || || | || | || | || |||| ||||| | ||||| Sbjct 1622591 GCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGG- 1622649 Query 76388 TCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC-TC 76444 ||| | |||| |||||| | || |||| || ||||||| || || || | | | Sbjct 1622650 -CTCGCCCGTCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCGACCGAC 1622707 Query 76445 AACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | |||||| | | || |||||| |||| | | || | | ||||| || Sbjct 1622708 CTTTGGGACTGGAAGCTGCTGAAGGAAAAGATCAGCAAACACGGCGTGAGGAACAGCCTG 1622767 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 || |||| || ||||| || || |||||||| || ||| |||| || || || | | | Sbjct 1622768 CTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATC 1622827 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTC 76624 || | ||||| | ||||||||| | || || | || ||||| || ||| Sbjct 1622828 GAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCGTC 1622887 Query 76625 AACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||| |||||| |||| || || | | || || || ||| | |||| |||||| Sbjct 1622888 AACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAAG 1622944 >seq17 Length=3631609 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| ||| | || ||||| |||||||| || |||||||| || |||||| ||| Sbjct 3276914 GAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCT 3276973 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || || ||| |||||||| | || |||||||||||||| || ||| || ||||| ||| Sbjct 3276974 ATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATT 3277033 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 3277034 AGCAGGGATGAGG 3277046 >seq784 Length=80426 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 |||||| || | ||| ||||| |||||||| | ||||| || ||||| || |||| || Sbjct 22880 AAAGTCCAACAAGCGTCACAGGCCTATTGGAATCGGTGTGCAGGGTCTGGCTGATGCCTT 22821 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 ||| | |||||| ||||||| |||||| || | || || ||||| Sbjct 22820 TATCCTCATGCGCTACCCATTTGAAAGCCCAGAAGCCCAGTTACTCAACATTCACATCTT 22761 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGC 76353 ||||||||| || |||| |||||||||| |||||||| |||| Sbjct 22760 TGAAACCATCTACTACGCCGCCCTGGAGGCCAGTTGTGAGCTGGC 22716 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 |||||| | | |||| |||||||| ||||| ||||| || || ||||||||||| ||| Sbjct 22381 AACAGTTTGCTTTTGGCCCCAATGCCCACAGCTTCCACTGCCCAGATCTTGGGTAACAAT 22322 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTAC 76588 || | | |||| ||||||||| ||||||||| Sbjct 22321 GAGTCCATTGAGGCATACACAAGCAACATCTAC 22289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596415744700160