Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15979 167 3e-35 seq434 161 1e-33 seq358 158 1e-32 seq110 154 2e-31 seq17184 152 6e-31 seq6898 152 6e-31 seq14846 100 3e-15 seq784 98.7 1e-14 seq124 96.9 4e-14 seq233 95.1 1e-13 seq3 86.0 8e-11 >seq15979 Length=583 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | || || Sbjct 443 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGCTGA 384 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| ||||||| | ||||||| || | | Sbjct 383 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCGGAGGCGATGCGCTCAAAGA 324 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||| | Sbjct 323 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGAT 264 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 263 GGACCTGCTTCAGCACCTTGTA 242 >seq434 Length=359018 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| | | | || Sbjct 129266 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 129207 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| ||||||| | ||||||| || | | Sbjct 129206 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCGGAGGCGATGCGCTCAAAGA 129147 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| |||||||| ||||||| Sbjct 129146 TGTCGTTGACAAACGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCGGTATCGGGGT 129087 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 129086 GGACCTGCTTCAGCACCTTGTA 129065 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| | | | || Sbjct 144518 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 144577 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| ||||||| | ||||||| || | | Sbjct 144578 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCGGAGGCGATGCGCTCAAAGA 144637 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||||||| Sbjct 144638 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCGGTATCGGGGT 144697 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 144698 GGACCTGCTTCAGCACCTTGTAGA 144721 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| |||||||||||||| | | | || Sbjct 146849 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGA 146908 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| ||||||| | ||||||| || | | Sbjct 146909 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCGGAGGCGATGCGCTCAAAGA 146968 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||||||| Sbjct 146969 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCGGTATCGGGGT 147028 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 147029 GGACCTGCTTCAGCACCTTGTAGA 147052 >seq358 Length=502766 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| | | | || Sbjct 399079 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 399138 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| ||||||| | ||||||| || | | Sbjct 399139 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCGGAGGCGATGCGCTCAAAGA 399198 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||||||| Sbjct 399199 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCGGTATCGGGGT 399258 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 399259 GGACCTGCTTCAGCACCTTGTA 399280 >seq110 Length=1641499 Score = 154 bits (170), Expect = 2e-31 Identities = 216/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| || || |||| ||| | || | ||||| ||||| | ||||| Sbjct 1621843 GCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTT 1621784 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| | |||||||||||| || | |||| || | | || | | | | || | Sbjct 1621783 GGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATGCAGCTCACCGCCAC 1621724 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| ||||| || |||||||| |||||||||||||| || || |||||||||||||| Sbjct 1621723 GCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCC 1621664 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| |||| |||||||| | | || ||||| || ||||| | || Sbjct 1621663 TTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGT 1621604 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||||||||||| || || | || ||||||| ||| | ||||| | || ||| Sbjct 1621603 CCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTA 1621544 Query 1630362 GGT 1630364 ||| Sbjct 1621543 GGT 1621541 Score = 116 bits (128), Expect = 5e-20 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 |||||||||||||| || |||| ||||| ||||| ||||||| | || || | Sbjct 1622930 TCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTC 1622871 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | || ||||| | ||| |||||||||||| ||||| ||||| | |||| |||||| Sbjct 1622870 CGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGC 1622811 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||||||||| |||||| || || ||| | || || Sbjct 1622810 CCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGC 1622751 Query 1627475 CGTG 1627478 |||| Sbjct 1622750 CGTG 1622747 Score = 100 bits (110), Expect = 3e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1628172 CTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTT 1628231 ||| ||||| |||||| || | | || |||||||||||||||||| | || |||| Sbjct 1622269 CTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTT 1622210 Query 1628232 GACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATGGC 1628291 | |||||||||| |||||||||||| | ||||| ||| |||| | | ||| |||||| Sbjct 1622209 GCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGC 1622150 Query 1628292 CGACCAGATCTGGCGCGC 1628309 |||||| ||| |||| Sbjct 1622149 GTACCAGAGCTGCTGCGC 1622132 >seq17184 Length=549 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| |||||||||||||| | | | || Sbjct 221 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGA 280 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||||||| |||||||| | ||||||| || | | Sbjct 281 TGGTGGATCGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCGGAGGCGATGCGCTCAAAGA 340 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||| || |||||| | Sbjct 341 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATCCCGGTGTCGGGAT 400 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 401 GGACCTGCTTCAGCACCTTGTA 422 >seq6898 Length=2146 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| |||||||||||||| | | | || Sbjct 1323 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGA 1264 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||||||| |||||||| | ||||||| || | | Sbjct 1263 TGGTGGATCTCTTGTTGTAGTGAGCCAGACGGGAGGCCTCGGAGGCGATGCGCTCAAAGA 1204 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||| || |||||||| Sbjct 1203 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATCCCGGTGTCGGGGT 1144 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1143 GGACCTGCTTCAGCACCTTGTA 1122 >seq14846 Length=623 Score = 100 bits (110), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || ||||| |||||||||||||| | | | || Sbjct 130 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACAGCGGTCTGGATCTCCCTGGAGGTGA 71 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| |||||||| |||||||| | ||||||| || | | Sbjct 70 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCGGAGGCGATGCGCTCAAAAA 11 Query 1254463 TGTCGTTGAC 1254472 |||||||||| Sbjct 10 TGTCGTTGAC 1 >seq784 Length=80426 Score = 98.7 bits (108), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| ||||| || ||| ||| | | || ||||| || ||||||||||| || Sbjct 23897 ACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 23956 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| || ||||| |||||| | ||| | Sbjct 23957 CTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATG 24016 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||||| ||| Sbjct 24017 ATGGCGTACCAGAGCTG 24033 >seq124 Length=1507065 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 ||||||||||||||| ||| ||||||||||| |||||||||| || ||| ||||| Sbjct 961693 CGTCATCTCCTTTGATGGCTCCTACGTCAACTACCGCCACTTGGCTCTGCTTTGTGACAC 961752 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 ||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 961753 TATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 961803 >seq233 Length=880882 Score = 95.1 bits (104), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| || ||||| | |||||||| |||| ||||||||||| ||||| | |||||| Sbjct 603985 TCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 604044 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||| ||||||| | ||| || ||||| ||||| ||||| || ||||| ||| Sbjct 604045 AGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAG 604101 >seq3 Length=7384412 Score = 86.0 bits (94), Expect = 8e-11 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAGGACATGCCCTGGTCG 733169 |||||||| || ||||||| | || || || || | | ||||||||||||| | || Sbjct 6253962 CGCCACGGTCAGAAGGGCATCCTGAGCCGCCTGTGGCCGGCCGAGGACATGCCGT--TCA 6253905 Query 733170 CCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229 ||| | | |||| | || |||||| | |||||||||||| | ||||||| |||||| Sbjct 6253904 CCGAGAG-CGGCATGAGCCCGGACATCCTCTTCAACCCGCACGGCTTCCCGTCTCGCATG 6253846 Query 733230 ACCATGGGCAAGATGCTCGAG 733250 ||||| || | | || ||||| Sbjct 6253845 ACCATCGGGATGCTGATCGAG 6253825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105446041460344