Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq110 201 1e-46 seq176 105 6e-18 seq54 105 6e-18 seq9982 100 3e-16 >seq110 Length=1641499 Score = 201 bits (222), Expect = 1e-46 Identities = 973/1525 (64%), Gaps = 47/1525 (3%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || ||| || || |||| || || | || ||| |||||| ||||| | | Sbjct 1622890 GTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGC 1622831 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| ||| || |||||| ||||| Sbjct 1622830 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAG 1622771 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || || |||| | ||||| |||| |||||| ||| | ||||||||| Sbjct 1622770 CAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCA 1622711 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 | ||| | || | || | |||||| |||||||| | || ||| || |||| Sbjct 1622710 AAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGA 1622651 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||| ||||||| ||||| || | |||| || | |||| ||| ||||| || || Sbjct 1622650 GCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGC 1622591 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 | | ||| || || ||| ||||| ||||||| | || |||| || ||| | Sbjct 1622590 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAA 1622531 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 ||| || | || |||| ||||||||||| || || ||||| | |||| || | Sbjct 1622530 CGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 1622471 Query 138921 ATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGAT 138977 |||||| || || | | | ||||| | || || ||||| | |||||||| Sbjct 1622470 GTGGCGCTTGTTGGAAG---TCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGAT 1622414 Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGCTTTAATCGTTCAAAATCGTAT 139035 ||||| | ||| ||||| ||||| || || | || || | || ||| | Sbjct 1622413 CTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTC--TTGAAGTCGAAA 1622356 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 || || | || ||| ||||| ||| |||||| || ||||| | |||| Sbjct 1622355 GT--CCGCTCTGGCGT----GACGT--ACA----TGTTGAGGGCGATGGAGGCCAGGTTG 1622308 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || ||||| ||||| | | |||| || || | || | || | || || ||| Sbjct 1622307 CAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCAC 1622248 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||||| || || | || || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 1622247 TTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATG 1622188 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT 139275 || || || || ||||| || | ||| || ||| | | | | | || | Sbjct 1622187 TAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTC 1622128 Query 139276 ATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGT 139332 | || | | | | | | || ||| || || |||||| | ||||| || | Sbjct 1622127 A--CCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCT 1622070 Query 139333 -TCACC-GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390 || || | | |||| || | |||| | | |||||||| | ||||| | Sbjct 1622069 CTCCCCAGCACTCGTC---CAGCCCAGGACATTCGCTGGGACACATCAAGGACCAGTCCT 1622013 Query 139391 CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC 139450 ||| || || | | |||||||||| || || |||||||| ||| | | | || | Sbjct 1622012 GGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTC 1621953 Query 139451 GCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510 || ||| || ||| || |||| |||| | ||||| ||||| ||||| Sbjct 1621952 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAACTCAAACACGTCGA 1621893 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGA 139567 ||||||||| |||||||| ||||| | || || | || ||||| || || |||| Sbjct 1621892 AGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGA 1621833 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 ||| || | | || ||| | || | || ||||||| ||| ||| | | | |||| Sbjct 1621832 CGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGT 1621773 Query 139628 TGGTGCTACGGATGGGACT--GTTGCGAGCTCGGACGTCATGT-ACATTGATGCCGATTC 139684 |||||| |||| || | ||| ||||| | || | || | |||||| | Sbjct 1621772 TGGTGCCTGCGATGTAGCTTCCTGTCGA--TCGGATG-CAGCTCACCGCCACGCCGATCC 1621716 Query 139685 CGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATG 139743 |||| | | ||||| || | |||| | || | | || ||||| || ||| ||| Sbjct 1621715 CGCCAGCGGACTTGGAAATGAGCGCGCACT-GCTTCAGGGTGTCGTAGATGCCTTCGATG 1621657 Query 139744 CTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCT 139803 |||||||||| ||| | || ||| ||||| || || ||||| | || || ||||| Sbjct 1621656 CTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCG 1621597 Query 139804 GCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCG 139863 || || || ||| ||||| |||||| | | ||||| | | ||| || ||| Sbjct 1621596 TTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCG 1621537 Query 139864 ATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGG 139923 | |||| | || || | |||||||| || || || || | ||| ||||| || || Sbjct 1621536 ACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGC 1621477 Query 139924 ATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGT 139981 || |||||||| || | ||| || ||| || | || ||| || |||||| Sbjct 1621476 GGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACG--CTCCAGAGTCTTGA 1621419 Query 139982 AGCCAAAGTACCTATAGTTGAAATC 140006 |||| ||| | | ||| |||||| Sbjct 1621418 AGCCGAAGAAGTTGTAGGAGAAATC 1621394 >seq176 Length=1137095 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || || || || || ||| Sbjct 797501 GATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 797560 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||| || || |||||||| || ||||| || || Sbjct 797561 TGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCA 797620 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 797621 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 797680 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| ||||| | || || | ||||| Sbjct 797681 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 797728 >seq54 Length=2421293 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| ||||| || || || || || ||| ||| | Sbjct 1259450 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 1259509 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || ||||| || || || || || || Sbjct 1259510 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAGGATAAAGAGGGCATCCCCCCTGACCA 1259568 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 1259569 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 1259628 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || ||||| || || ||| Sbjct 1259629 CATCCAGAAAGAATCCACCCTCCAC 1259653 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| ||||| || || || || || ||| ||| Sbjct 1257440 GATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAG 1257499 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || |||| ||| | |||||||| || || || || || || || || | Sbjct 1257500 TGATACCATTGAGAACGTTAAGGC-CAAGATCCAGGATAAGGAGGGCATCCCCCCTGACC 1257558 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | ||||||||||||| || |||||||| ||| | | | |||| || || | Sbjct 1257559 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 1257618 Query 24882 ACATTCAAAAGGAATCGACACTACACTTG 24910 | || || ||||| || || || ||| || Sbjct 1257619 ATATCCAGAAGGAGTCCACCCTTCACCTG 1257647 >seq9982 Length=962 Score = 100 bits (110), Expect = 3e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || |||||||| || || || || || ||| ||| | Sbjct 720 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAAACCATCACCCTGGAGGTGGAACCCAGC 779 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| || || || || || || || || || Sbjct 780 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 839 Query 24824 CAACGTTTGATCTTTGCCGGGAAA-CAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| ||| |||||||| ||| | | | |||| || || || Sbjct 840 CAGAGGCTGATCTTTGCCGGCAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 899 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || ||||| || || ||| Sbjct 900 CATCCAGAAAGAATCTACTCTCCAC 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449781571408960