Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq54 131 1e-25 seq176 127 1e-24 seq9982 120 2e-22 >seq54 Length=2421293 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34771 CAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 |||||||| |||| ||||||||| || || ||||| || ||| |||| |||| ||||| Sbjct 1257647 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 1257588 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 ||||||||||| |||||||| | |||||||| | || | |||||||| || | || Sbjct 1257587 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 1257528 Query 34891 TTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCC 34950 || || ||| | || | ||| ||| || || || | ||| ||||| || || Sbjct 1257527 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCC 1257468 Query 34951 CGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || |||||||||||||| Sbjct 1257467 GGTGAGGGTTTTCACAAAGATCTGCAT 1257441 Score = 113 bits (124), Expect = 3e-20 Identities = 169/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 34743 AATCATTTCCT-----CCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAAT 34797 |||||||| || ||||||| | || || ||||| | |||| || ||||| || Sbjct 1259689 AATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGAT 1259630 Query 34798 GTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTG 34857 ||| ||||| || ||| |||| |||| ||||| || || || || |||||||| | || Sbjct 1259629 GTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTG 1259570 Query 34858 CTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC 34917 |||||| | || | ||||| || || | ||||| |||||| | || | || Sbjct 1259569 CTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC 1259510 Query 34918 ATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || | ||| ||||| || || ||||||||||| |||||||| ||||| Sbjct 1259509 GCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 >seq176 Length=1137095 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 ||||||||||| | || |||||||| | |||| ||||||||| ||||| ||||| || Sbjct 797729 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 797670 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| |||| ||||| || || || || |||||||| | |||||||| | || Sbjct 797669 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 797610 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || || || || | || ||| || ||| | || | ||| ||| ||| || Sbjct 797609 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || |||||||| || || || |||||||| Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 >seq9982 Length=962 Score = 120 bits (132), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || || ||||| ||||| ||||| || ||| |||| |||| Sbjct 932 AGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 873 Query 34826 TCCAGTTGCTTT-CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| |||||| ||||| |||||||| | |||||||| | || | |||||||| || Sbjct 872 TCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 813 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || || | || ||| || || || | ||| ||| Sbjct 812 CTGGATTTTAGCCTTGAC--ATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATG 755 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || ||||||||||| ||||||||||||||| Sbjct 754 GTTTTACCAGTGAGGGTCTTGACAAAGATCTGCATG 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325610903731208