Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq54 118 8e-22 seq176 116 3e-21 >seq54 Length=2421293 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || || ||||||| ||| || || | || || ||||||||||| || ||||| || || Sbjct 1259679 TGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1259620 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | |||||| ||| || || |||||||||||| | |||| || ||||| || || Sbjct 1259619 GACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 1259560 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || || |||||||| || || | ||| ||||| | || | ||||| |||| Sbjct 1259559 GGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCC 1259500 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| || | ||| || ||||| || ||||| Sbjct 1259499 ACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 >seq176 Length=1137095 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 29558 GTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG 29617 |||||||||||| || ||||||| || || ||||| || || || ||||| || || | Sbjct 797730 GTCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 797671 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 | |||||| ||| || || |||||||||||| | |||| || ||||| || || | Sbjct 797670 ACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 797611 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 |||| || ||||| || || ||| |||| || || | || | || ||| | || Sbjct 797610 GAATGCCTTCTTTATCCTG-AATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCC 797552 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || ||||| | |||||| || || |||||||| || Sbjct 797551 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385122335669112