Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq63 223 3e-52 seq629 111 1e-18 seq27 89.7 4e-12 >seq63 Length=2302000 Score = 223 bits (246), Expect = 3e-52 Identities = 931/1466 (64%), Gaps = 10/1466 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||||| ||| || || || || ||||| || | |||||| || ||||| || Sbjct 320277 TTTGTCGACGGCAGACACGTTTAGGATGCCGTTGGCGTCAATATCAAAGGTAACTTCGAT 320218 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 320217 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCCAAGAGCTCAAACTTCCCCAGGAGATT 320158 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||| || | | || || ||| | | || || Sbjct 320157 GTTGTCCTTTGTCATGGCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTT 320098 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 |||||| || || | || | |||| | | || || || || ||||||| | | Sbjct 320097 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGA 320039 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||| | ||||||| ||||| ||||| || | || || || | || | ||||| | Sbjct 320038 TAAGAGGTGTCATAACGCCACCGGCTGTCTCAATGCCCAGCGACAAGGGTGCCACATCCA 319979 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 319978 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 319919 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| || || ||||||||||| || | | | ||||||| | ||||||||| Sbjct 319918 CTGCACCATAGGCCACTGCTTCATCAGGGTTGATGCTCTTGTTTAGTTCTCTACCATTGA 319859 Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 319858 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 319799 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 |||||| | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 319798 CTTCATGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 319739 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | ||||| | |||||| || || ||||| || || || | | | | Sbjct 319738 GTGTTCCCCTAAAGAGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGTGATCGAGGTGT 319679 Query 282015 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 282074 | | ||||| || || || | || |||| ||||| | | ||||| || || | Sbjct 319678 AAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGACA 319619 Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGAT 282130 | | || || | ||||| ||||| | ||||| | | ||| | | ||| Sbjct 319618 AGGTCCTCTTTGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTGGC 319559 Query 282131 TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190 |||| || | || | ||||| || || || || ||| | | || | || Sbjct 319558 TGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTCGG 319503 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || |||||||| || || || | | || | || | ||| | | | || | || | Sbjct 319502 TTGTCAAAATCCTCTCCGCCGAGGTGTGTGTCCCCGGCCGTGGATTTCACCTCAAATATG 319443 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||||| |||| | || | | || ||| || || ||||| | ||||| || || Sbjct 319442 CCATCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGGTCAAAGATGAGG 319383 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 ||||| ||| || | ||||||||| || || |||| || ||||| || || Sbjct 319382 ACATTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAGGCAATGGCTGCAGCTGTCGGC 319323 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| || || | | |||||| || || | || ||| ||||| || |||||||| Sbjct 319322 TCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTTGC 319263 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 ||||| ||||| ||||| || || || || || || || |||| | || | ||| Sbjct 319262 CTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTCCC 319203 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | | | || ||| ||| | |||||||| | | ||| || ||||| | ||| ||| Sbjct 319202 AGAAAGGCCTCCGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCAGGA 319143 Query 282551 GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 282610 | || ||| ||| || |||| || | | | || || | || Sbjct 319142 CAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCGTTG 319083 Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 282670 || || || || ||||| |||||| || || || || |||||| ||| ||| Sbjct 319082 ATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTTCTT 319023 Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 ||||| | ||||| |||||||| || || ||||| || || | ||| |||| | ||| Sbjct 319022 CCAATGAGCCGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATGGCAACTTGGTTCTTG 318963 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||| ||||| || ||||| || ||||| | || || |||||||| | Sbjct 318962 GCAGCATCCCCAATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTCCTG 318903 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || ||||||||||| || |||||||| ||||| |||| || | || || |||||| Sbjct 318902 TTGCCTTGATCATTGGCGATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAAGAG 318843 Query 282851 AAAGTTGTTCCTAAATCAATACCAAT 282876 | || || || | ||| || ||||| Sbjct 318842 TAGGTGGTGCCCAGATCGATGCCAAT 318817 >seq629 Length=126638 Score = 111 bits (122), Expect = 1e-18 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||| || || | ||| | |||| |||||||||||||||||||| Sbjct 38749 CAAAAACTGTATTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 38808 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 38809 TCTCTGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 38868 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | ||||| ||||| | | || ||||| | ||| | Sbjct 38869 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAATAGGTGGTTCCAAGATCGA 38928 Query 282870 TACCAA 282875 | |||| Sbjct 38929 TTCCAA 38934 >seq27 Length=3139199 Score = 89.7 bits (98), Expect = 4e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| ||||| || |||||||| | ||||| || ||||| || |||||||| ||||| Sbjct 1245686 CACATTGAGAATGCCGTTGGCATCAATGTCAAAGGTCACTTCGATCTGAGGGACTCCTCT 1245745 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||||||| || || || ||| | |||| | |||| ||||||||||||| || Sbjct 1245746 GGGAGCAGGCGGAATACCAGTCAATTCAAATTTCCCCAAGATATTATTATCTTTGGT 1245802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739617455990832