Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq110 318 6e-82 seq54 131 2e-25 seq176 127 2e-24 seq4001 113 4e-20 seq784 86.0 6e-12 >seq110 Length=1641499 Score = 318 bits (352), Expect = 6e-82 Identities = 984/1507 (65%), Gaps = 44/1507 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || | ||| ||||| |||| ||||| | || || | |||||| || ||| Sbjct 1622889 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 1622830 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || | |||||||||||||||| ||||| ||||| | |||||||||||| ||| | | Sbjct 1622829 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 1622770 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| ||| | || ||| | || | || || |||||| | ||||||||| Sbjct 1622769 AGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCAA 1622710 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || | ||| ||| | ||||||||||||||| || ||||| ||| |||| | Sbjct 1622709 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG 1622650 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCG 148559 |||||||||| ||| || ||| || | || || || |||||||| ||||| || ||| Sbjct 1622649 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCG 1622590 Query 148560 CCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCG 148616 ||| ||| || |||||| || || ||||||||||| || ||| |||||| Sbjct 1622589 GCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGC---TTCGGGACTTTCG 1622533 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 |||| |||| | | | || |||||||| || ||||| ||||| | || || ||| Sbjct 1622532 AACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGC 1622473 Query 148677 CGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG--AGCGGATAGTGGTTGCGGTCGATGA 148734 | ||| ||||||| || | | |||| | | ||| |||| |||| |||||||| Sbjct 1622472 CTGTGGCGCTTGTTGGA-AGTCTC-CGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGA 1622415 Query 148735 TCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACT 148794 |||||| || || ||| | ||||| || | | |||| | || ||| | Sbjct 1622414 TCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAG 1622355 Query 148795 TGTCATCT------ACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCG 148848 | ||| ||| | ||| ||| | |||||| ||||| || ||||| |||||| Sbjct 1622354 TCCGCTCTGGCGTGACG-TACAT--GTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCA 1622298 Query 148849 TCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGC 148908 ||| ||| | | ||||||| || | ||| | ||| || |||||||| ||||| || Sbjct 1622297 CCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGC 1622238 Query 148909 CCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGC 148968 ||| ||||| || |||||||| | |||||| ||||||||||| |||||||| || | Sbjct 1622237 CCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCC 1622178 Query 148969 CAGTTTCCACCTGCGTTTCCACTATGAACCGATGC--AGGTCCTGCGCGCGCACTTGCTG 149026 | ||||| ||| | || | ||| || | || | |||||| ||| | Sbjct 1622177 CGGTTTCGGTCTGGGACTCGATGATG--GCGTACCAGAGCTGCTGCGCCTTCACCACCCT 1622120 Query 149027 CTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCA 149086 || | || |||| ||| ||| || || ||| ||||||| |||| || |||| Sbjct 1622119 CTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCA 1622060 Query 149087 ATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACAC 149146 ||||| || || || || | | || ||||| | ||||| | || | ||| Sbjct 1622059 CTCGTCCAGCCCAGGACATTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCAC 1622000 Query 149147 GCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAG 149204 | |||||| ||||| || || | ||| | ||||| | ||||| | || | ||| Sbjct 1621999 TCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGC-- 1621942 Query 149205 TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGC 149264 || || || |||| ||| | || | || | ||| |||||| ||| Sbjct 1621941 TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGC 1621882 Query 149265 TCAATGTACACCGCGAGCGCGCC------CTTGCGCTTGCCGCCCTGGTCGACGTGGCGC 149318 || | |||| |||| || || |||| ||||||||||||||||||| || Sbjct 1621881 TCCAGATACATGGCGAAGGCCCCGGGTCTCTTG---TTGCCGCCCTGGTCGACGTACCGA 1621825 Query 149319 ACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAG 149378 | ||||||| | |||| | ||| || | | || ||| ||||||| || Sbjct 1621824 GCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCT 1621765 Query 149379 CTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTAC 149438 ||| || || || ||| | | ||| |||||||| ||||| || || Sbjct 1621764 GCGATGTAGCTTCCTGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAC 1621705 Query 149439 TTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTC 149498 || || ||| |||||| | || || ||||||||| |||||||||||| |||| Sbjct 1621704 TTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTC 1621645 Query 149499 ATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTG 149558 |||| ||||| ||||| | ||| ||||| || ||||| ||| | ||| Sbjct 1621644 ATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTC 1621585 Query 149559 GGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCC 149618 || |||||| || || | |||| || | | ||| | ||||| || ||| Sbjct 1621584 GGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCG 1621525 Query 149619 ATGTCATCG-CCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGC 149677 ||||| ||| || ||||| || | | || | ||| ||||| |||||||||||||| || Sbjct 1621524 ATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGC 1621466 Query 149678 CACTTT---GTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTA 149734 |||||| ||| || || |||| |||| || || |||||| |||| ||| | Sbjct 1621465 CACTTTCCCGTT---GATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAA 1621409 Query 149735 CTTGTAG 149741 |||||| Sbjct 1621408 GTTGTAG 1621402 >seq54 Length=2421293 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | || || |||||||| | Sbjct 1257638 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 1257580 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 1257579 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 1257520 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||| ||||| || | ||||| |||||||||||| || | Sbjct 1257519 TAACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 1257460 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 1257459 TTTTCACAAAGATCTGCAT 1257441 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||| ||| || ||| | | | || || ||||| |||| Sbjct 1259647 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 1259589 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| || || || ||| || || Sbjct 1259588 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCT 1259529 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| |||| ||||| || | ||||| |||||||||||| || | Sbjct 1259528 TGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 1259469 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 1259468 TCTTGACAAAGATTTGCAT 1259450 >seq176 Length=1137095 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || ||||| |||| Sbjct 797699 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 797641 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||| |||||||| || || |||||| || Sbjct 797640 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCT 797581 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| ||| || || || || | Sbjct 797580 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 797521 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 797520 TTTTCACGAAAATCTGCAT 797502 >seq4001 Length=6841 Score = 113 bits (124), Expect = 4e-20 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | ||||| |||||||||| Sbjct 6692 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 6750 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 6751 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 6810 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 ||| | ||||| |||||| |||||||||| Sbjct 6811 TGACATTCTCAATGGTGTCGCTGGGCTCCAC 6841 >seq784 Length=80426 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||| || || ||||| | ||| ||||||||| | ||||| ||||| || | || | Sbjct 23889 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 23948 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || |||| |||||||| ||||||||||| ||||||||||| Sbjct 23949 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 23988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483296125775680